HsaALTD1038865-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000181894 | ZNF329
Description
zinc finger protein 329 [Source:HGNC Symbol;Acc:HGNC:14209]
Coordinates
chr19:58142557-58154591:-
Coord C1 exon
chr19:58154428-58154591
Coord A exon
chr19:58154372-58154427
Coord C2 exon
chr19:58142557-58142661
Length
56 bp
Sequences
Splice sites
5' ss Seq
TAGGTCAGT
5' ss Score
6.39
3' ss Seq
TTATTATGGGTGTCCCACAGAGA
3' ss Score
8.42
Exon sequences
Seq C1 exon
TTGTGGAATGTGAGCCCTGGGGAAATAAGTGGAAGAGGCATGGACCGTGTGGCTCCACTGGGGCGTTCGCGAATGCCTCCTGGAGGAGGAGACCAACCAGAAAGAAGAGGCAGCGTCCAGCAACTGGACAAAGGCCAGAGGGCCTTTCTGGCAAGAGGACTGGG
Seq A exon
GTGAGCAGAAGCTGATCCGGCTCTTTATCCCTGGGCGCAAGTGCTGTGTGGCATAG
Seq C2 exon
AGATGGCTGGAGCCGTGTGGATGGGCATAAATGGCTAATGTCCAGCAACCATCGATGTCAAGTATCCACACACCTGGCCTGAATGGATCCCTCTGCCTTTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181894-1-6,2-6-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTGGACAAAGGCCAGAGG
R:
GATCCATTCAGGCCAGGTGTG
Band lengths:
133-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains