HsaEX1045005 @ hg38
Exon Skipping
Gene
ENSG00000181894 | ZNF329
Description
zinc finger protein 329 [Source:HGNC Symbol;Acc:HGNC:14209]
Coordinates
chr19:58126328-58154591:-
Coord C1 exon
chr19:58154428-58154591
Coord A exon
chr19:58142557-58142661
Coord C2 exon
chr19:58126328-58129511
Length
105 bp
Sequences
Splice sites
3' ss Seq
TTATTATGGGTGTCCCACAGAGA
3' ss Score
8.42
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
TTGTGGAATGTGAGCCCTGGGGAAATAAGTGGAAGAGGCATGGACCGTGTGGCTCCACTGGGGCGTTCGCGAATGCCTCCTGGAGGAGGAGACCAACCAGAAAGAAGAGGCAGCGTCCAGCAACTGGACAAAGGCCAGAGGGCCTTTCTGGCAAGAGGACTGGG
Seq A exon
AGATGGCTGGAGCCGTGTGGATGGGCATAAATGGCTAATGTCCAGCAACCATCGATGTCAAGTATCCACACACCTGGCCTGAATGGATCCCTCTGCCTTTCAGAG
Seq C2 exon
TTTGGGATATGAGATTGAAAATGACGACTCGGAATTTTCCTGAGAGAGAAGTACCCTGTGATGTAGAAGTGGAAAGATTCACAAGGGAAGTTCCCTGCTTGTCCAGTTTAGGTGATGGTTGGGACTGTGAGAACCAGGAGGGACACTTGAGGCAATCAGCTTTAACTCTGGAGAAACCAGGGACTCAGGAAGCAATTTGTGAATATCCTGGTTTTGGGGAGCATTTGATTGCAAGCTCAGACCTTCCACCGTCTCAGAGAGTTCTGGCAACAAATGGTTTCCATGCACCTGACTCAAATGTTAGTGGTCTGGATTGTGACCCCGCCTTACCCAGCTATCCTAAAAGTTATGCAGATAAGAGAACTGGTGACAGTGATGCCTGTGGAAAAGGCTTCAACCATTCCATGGAAGTTATTCATGGAAGAAATCCAGTGAGAGAGAAGCCCTACAAATACCCTGAAAGTGTTAAGTCTTTTAATCATTTTACCTCTCTTGGTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181894_MULTIEX1-2/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.6),PF0009621=zf-C2H2=WD(100=4.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCTGGGGAAATAAGTGGA
R:
CTGGACAAGCAGGGAACTTCC
Band lengths:
258-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains