HsaALTD1039211-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000182983 | ZNF662
Description
zinc finger protein 662 [Source:HGNC Symbol;Acc:HGNC:31930]
Coordinates
chr3:42906174-42908105:+
Coord C1 exon
chr3:42906174-42906921
Coord A exon
chr3:42906922-42907155
Coord C2 exon
chr3:42908022-42908105
Length
234 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGC
5' ss Score
5.66
3' ss Seq
TTAAACACATGTTGTTTCAGGAG
3' ss Score
7.52
Exon sequences
Seq C1 exon
CGCTGCCCCGGGCGCGCCGGGTGAGTGCGGGGCCGGAGCCTGGAAGCAGTCTTGGCCCTGCCCTGGGTTCTAGGCCCGGAGACGGGGTGGTGCGGCGGCTGGGAAATGGGGGTACAACCCAGAGTGAGGGGCCTCGAGGGACAGGCAGCACAGCGGAGTCGACACCCCTGGACCTGAGCCTCAAGGAGAGCAGACGTGCAGCGGCACGGGGTTGAGCCGACTGCTGGGGCAGAGCGCACAGAGTGCTGTCGGGGGCGATGAATGGCCAGAATTTCAGAGCTGCCTTTACAGAGCTGGTTATGTTTGAGCTGGGTATTAGGTTGAAAAGGAATTTGCAATGCAGGAGCAGGAAGGAAGAACTGGATATTCAGGCAAGAGTAGCCGCAGGTGCAAGGACACAGAACAGGGTGAGGAAAGAGTTTGGTTTCCCAATGCAATGGTGAGAGGATCGGAGATGAGAGTGGTGGTGGCTGATGATCCTGGCCAGGAAAGCTGGGTCT
Seq A exon
GTGAGTAGTGAATGGAATTGTCTGTAGTGCAGAGGAATGTGGACTCTATTAGGCAGACAAAGTTGAGCCAGCCAAAGCCTTGGAGCCCTGGAGTGCTGGATAAATAGCTGTGGAGACTTTCTAGTGCGCAAGGACTGAAGTGCAGTGGACCAGAATGGGCTCCTCCACAGTGTGGAGACTGAGACCCTGAAGGAGGCAGTGGCTGAGAATTACGGGAAGTCCCAACGGCTGGAG
Seq C2 exon
GAGTCAGTGACCTTCGAGGATGTGGCCGTCTACTTCTCTGAGAACGAATGGATCGGCCTGGGCCCTGCTCAGAGAGCCCTGTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182983-2-1,3-1-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGAATTTCAGAGCTGCCT
R:
GGCCGATCCATTCGTTCTCAG
Band lengths:
294-528
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains