HsaINT0188032 @ hg38
Intron Retention
Gene
ENSG00000182983 | ZNF662
Description
zinc finger protein 662 [Source:HGNC Symbol;Acc:HGNC:31930]
Coordinates
chr3:42905731-42908148:+
Coord C1 exon
chr3:42905731-42906168
Coord A exon
chr3:42906169-42908021
Coord C2 exon
chr3:42908022-42908148
Length
1853 bp
Sequences
Splice sites
5' ss Seq
CGGGTGTGG
5' ss Score
3.85
3' ss Seq
TTAAACACATGTTGTTTCAGGAG
3' ss Score
7.52
Exon sequences
Seq C1 exon
TGGCAGTTAAAGAAATAACTCCCCAGGAGGTGCTAGACATCGGGCGCATGTTAGAGGCACAAAGATGAGAATGTTAAAAGACATAAAATACAGGTCTGCTCTGGGAATGCAAAAACTGGTAAAAGGAGAGATAAAAGAGCAGGTGCAGTCTAGTGAAGTACCCGCTACCTCCTATCAGCAAATATCTGTCCACCTAGGGTGCAGCGAGCTGGAGAGGAAGGGGTGGCCTAGAGCGCAGGGGAAGGATTCCTCCCCAGCCGCCTGCACCCCTACCCCGGTAGCGGTCCCTGGGATCGTCCGTGTCTCCAGGAGAACCGGACCGCTCTCCCCTCCCTCCCCGAGCGAGAAAGGAGGACCACAGAGATGCGGCGCCCTCCGCCGTCCTAGAGCAACCGGAGCGGCCCGAGCCCCGGCCTCCCGGATGCTGGGGCCTGGCGG
Seq A exon
GTGTGGAGCACGGGGAGTCGGGCGTGGGGCGGGCAGGGAGTGGAGTCGGGGTCTTACTCCGGTGGCTGCAGGGCGCAGGGTAGCCGTGTCAGGCCTGCCCAGGTGCAGAGCGCTCTTCCGCGACCCCAACAGCCTCTGGTCCGGTCTGGCGCGCCCTCGCTTTCCCAGAGGGCGACCTGGGCTATGGCGGCCGTGGCGCTGGCGAGCGGGACACGCCTCGGCCTTGTCCTCGAGCTGCTCCCGGGACAGCCCGCGCTGCCCCGGGCGCGCCGGGTGAGTGCGGGGCCGGAGCCTGGAAGCAGTCTTGGCCCTGCCCTGGGTTCTAGGCCCGGAGACGGGGTGGTGCGGCGGCTGGGAAATGGGGGTACAACCCAGAGTGAGGGGCCTCGAGGGACAGGCAGCACAGCGGAGTCGACACCCCTGGACCTGAGCCTCAAGGAGAGCAGACGTGCAGCGGCACGGGGTTGAGCCGACTGCTGGGGCAGAGCGCACAGAGTGCTGTCGGGGGCGATGAATGGCCAGAATTTCAGAGCTGCCTTTACAGAGCTGGTTATGTTTGAGCTGGGTATTAGGTTGAAAAGGAATTTGCAATGCAGGAGCAGGAAGGAAGAACTGGATATTCAGGCAAGAGTAGCCGCAGGTGCAAGGACACAGAACAGGGTGAGGAAAGAGTTTGGTTTCCCAATGCAATGGTGAGAGGATCGGAGATGAGAGTGGTGGTGGCTGATGATCCTGGCCAGGAAAGCTGGGTCTGTGAGTAGTGAATGGAATTGTCTGTAGTGCAGAGGAATGTGGACTCTATTAGGCAGACAAAGTTGAGCCAGCCAAAGCCTTGGAGCCCTGGAGTGCTGGATAAATAGCTGTGGAGACTTTCTAGTGCGCAAGGACTGAAGTGCAGTGGACCAGAATGGGCTCCTCCACAGTGTGGAGACTGAGACCCTGAAGGAGGCAGTGGCTGAGAATTACGGGAAGTCCCAACGGCTGGAGGTCAGCAGTATTTGTTTCTTAAGAGGATGAGAGAAAGAAGGTGCAGGAGCTGAGACTCCTAGAGATATAGAAAATGGGGACATGGAGATTGGGACGTGGGTAAGCAAGTGAGGTGGGATCTTTGTGAGAGTGTTGCGGGTGGTGGGGGTGCAGGGAGTAAAGTCACAACGAGGATCTGCCCTGTTGAGTACAGTGTTCAGAGCAACCTGAATGTTCTGAGGAGCCCTAGCTGCCTCTGTGGCTGGTGGCAGTGACTGGGGAGGACAAAGGAGGAAGAGTCCTATACAGGGGCAGCAGGGATGGCAGGAATGGGGACGGAAGGCAGTGTGGCATAACAGGCAAGAGCCAGAGTCAAACAGGCCTGGGTTCTGTCTCAGTTCTGGAACTTTGGGGGAAGTTAATCCCTCCGAGTCTCAGTTTCCTCTTCTAAAAAACGGATCTGATAGTAGGCTATGAGACATAACAAAGAATATATGTCAAGTGCTTGGCACAGGCTTAATAAATGATAGTTGTTATCAAGGGTGGGTGACCTCTGAAGGAGGACACATTGTGGAGAGAGGATGGGACCTAGAGCACAGATGTGGTTTGGGGTATAAGGATGAAACAAGAAAACTTTTGCAGACTCATGAAAAAGAGGAGAAAATGTTTGCTGAAATAAAGATGAAGAGACATGAGAAAATTGATGGCTGATGCCTTGTCTCTTTGTACATAGGAGGCAAAAATCTTCTGCTGATAGAGTTCCTGTAGACATTCAGAATCCAGAATCCCCACAGGCACCCCCACAGTACCTTTTGATGCCCTGTCTCCCCTTCCTCTTGGCCTGGTCCTGGGGTTGTCCTAGGGCATTTAAACACATGTTGTTTCAG
Seq C2 exon
GAGTCAGTGACCTTCGAGGATGTGGCCGTCTACTTCTCTGAGAACGAATGGATCGGCCTGGGCCCTGCTCAGAGAGCCCTGTACAGGGATGTGATGCTGGAGAATTATGGGGCTGTGGCTTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182983:ENST00000440367:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAGTACCCGCTACCTCCT
R:
GGCCGATCCATTCGTTCTCAG
Band lengths:
344-2197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains