MmuINT0178806 @ mm9
Intron Retention
Gene
ENSMUSG00000022526 | Zfp251
Description
zinc finger protein 251 [Source:MGI Symbol;Acc:MGI:1918841]
Coordinates
chr15:76700712-76701865:-
Coord C1 exon
chr15:76701083-76701865
Coord A exon
chr15:76700845-76701082
Coord C2 exon
chr15:76700712-76700844
Length
238 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
CCGGCATGTTGTCATTCCAGGGT
3' ss Score
6.02
Exon sequences
Seq C1 exon
GTTCCGCCCCCAGCCGACAGTCAACTTGCCCCTTCTGCGCGGGCCAGGCTGGGTGTAGGTGGGTGCCTGGTCCAGAGGCTGAGGCGAGGCTCCCGCGTTCCCATCGCTCTGCAGGTGGGCAAGGACAGCCAGCAGGCAGCTCGGGCTGGCCTGCCTCAGCTTCTGGCCAAGGGCGCCGATGATGCCGCGACACCTGGGAGGAGGGATAGTGGAGGAGGCAGCGGTCGCAGCCACAAGGGCCACCCAGCAGCGGGAGAACCCGTGGGAGGGACAAGCCGCTGGCGGCGACGCGGCCTTGGGAGGCATGGATGTGAAGGACGATGACTTTTAAGTTTTTGCCCAGAGCTAGCCCTCGCCGCCTGTGTGTCCACTCACACCCGCAACCCGGTGAGGCCTGTCGCGGCGAGGCCCGTAGCCTTTTCCAGGCTGGCCCTCTAAAGCTGAGGTGGTGCTATGCGTCCACTCTGGGTGTCCTGGCGCATGGCTGGAACTGCCAACTCGCGCCGTGCATGGGGCAGTTCTCAGTTTGGATAGCGGCACGGGACAGGTCACACGCCGGCACTCGCGGCTTTAGGACACTCCAGAAGGCCACTTCCGAAGCAAGGTCTGTCGTCGTCTTCTGACCATCCGGCCATTGCCCCAGCTGAATGGGGCTGAGTTTGTCTGTTTTCTCTCCCTGAGAGTAAGTTAGGGAGACCCCAGGCCGGGGCTGCCTCCTGCCTACCACGGATTCCAAGGTGGTTCACAGCCCAGATGGCTGACAAGTCCTGCTCCCCGACTCCG
Seq A exon
GTGAGTTACTCCTCCTCTCTACTACCCTGTCACAAGCTGTCTCCTCGAGAGCTGTCAAGTGAGTAGATAGTGAAGTTGGAAATTAAAAAGATCAGGATGCAGACGACAGTCTCTTGTAAGAGTAGCACGCTCTGTGGCCAGTTGGGCCTTGCCTGACCCACCAGACTCAGTTCAGCTACCCCAGCAGAGATCAACAGGGCACACCCCTGGTGTACTCTCCGGCATGTTGTCATTCCAG
Seq C2 exon
GGTGAGACGCCTCTGACCTTCCAAGATGTGGCTGTGTACTTCTCCAGGGCAGAAGGGCAGCAGCTTAGCCCCCAGGAGCGGGCGCTGTACCGGGATGTGATGTTGGAGAACTATGGGAACGTGGCTTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022526-Zfp251:NM_001007568:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.089
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=91.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGGGGCAGTTCTCAGTTT
R:
ATCTTGGAAGGTCAGAGGCGT
Band lengths:
303-541
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: