HsaINT0186592 @ hg38
Intron Retention
Gene
ENSG00000198169 | ZNF251
Description
zinc finger protein 251 [Source:HGNC Symbol;Acc:HGNC:13045]
Coordinates
chr8:144754192-144754803:-
Coord C1 exon
chr8:144754696-144754803
Coord A exon
chr8:144754322-144754695
Coord C2 exon
chr8:144754192-144754321
Length
374 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
GCGGCGATGTTTTGTTGCAGGAG
3' ss Score
6.72
Exon sequences
Seq C1 exon
GTAAGTTCGGGGAGACTTCAGGCCAGGGCAGTCTCCTGTCTTCTCTTGGAAACCACAGCAGCCCATGCACACAGAATGGCAGCCACATTCCAGCTTCCAGGGCACCAG
Seq A exon
GTGAGTTAACCCTCCTTCCTGCCCACCTCTTCATCTTCATCCCCATCCCAGTCAGAAGCTACTCTCCTCTGGAGCCGTGAGCCCGGCAACTGGTAAGGCCAGCCAGGGGCTCATAGCAACCGTGAGGAAAGGGTTCTGAGAGGTAGACTCGCCCTCCTGCAGGGAGAGGGGCTCTGAGCTCAGCTGGGTCCCCGTGTAGCTGAAGTTGGCTGGTCCTCAGCGCTCTCAGCTGCCCCATCAGGGACCTGCTGATACACAGTTCATACTGACCACAGCAGGGCCCTGGGTAGTGGGGCCCCACCAGGTCAGGGCCCTTTTAGTGCAGGCTGCTGCCCCGTGGGCATGGCCTGGGCAGCGGCGATGTTTTGTTGCAG
Seq C2 exon
GAGATGCCGCTGACCTTCCAGGATGTGGCCGTGTACTTCTCTCAGGCGGAGGGGCGGCAGCTGGGCCCCCAGCAGCGGGCGCTCTACCGGGATGTGATGCTGGAGAACTATGGGAACGTGGCCTCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198169:ENST00000292562:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=PU(95.1=88.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAAGTTCGGGGAGACTTCAGG
R:
CCAGAGAGGCCACGTTCCC
Band lengths:
238-612
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains