RnoINT0167904 @ rn6
Intron Retention
Gene
ENSRNOG00000030308 | Zfp251
Description
zinc finger protein 251 [Source:RGD Symbol;Acc:1311138]
Coordinates
chr7:117938882-117940007:-
Coord C1 exon
chr7:117939245-117940007
Coord A exon
chr7:117939015-117939244
Coord C2 exon
chr7:117938882-117939014
Length
230 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
TTGGCATATTGTCATTCCAGGGT
3' ss Score
4.98
Exon sequences
Seq C1 exon
GTCAGCAGTCAGCTTGCCCGCTTAGCGCGGGCCAGGCTGGGTGTAGGTGGATGCCTGGTCCAGAGCGCCCTGGCTGAGGTGAGGCTGTCGCTTTGCAGGTGGGCAAGGACAGCCAGCAGACAGCGTCTCGGGCTGGCTGCCTCTGCTTCTGGCCAAGGGCGCTGATGATGCCGCGACACCTGGGAGGAGGGATAGTGGAGGAGGCAGTGGTCGCAGCCAGAGGGGCCACCCAGCAGCGGGAGAACCCGCGGGAGGGACAAGCGGCCGGCGGCGACGCGGCCTTGGGGGGCATGGATGTGAAGAACGATGGCCTTTAGGTTTTGCCCAGGGCTAACCCTCGCCGCCTATTTCATGTCCACTCACACCCGCAACCCTGTGAGGCCTATCGCCGTGAGGCCCGCAGCCTTTTCCAGGCTGGCCCTCTAAGGCTGAGGCGGTGCTATGAGTCCACTCTTGGTGTCCTGGTGCATGGCTGGAACTGCCAACTTGCGCCGTGCTTGGGGCAGTTCTCAGTTTGGATAGCAGCACGGGACAGGTCGGTCACACGCTGGCTCTCGAGGCTTCAGGACACTCCAGAAGGCCACTTCCGAAGCAAGGTCTGTCGTCCTCTTCTGACCATCTGTCCACTGCCCCAGCCGAATGGGGCTGAGTTTGTCTGTTTTCTCTCCCTGAGAGTAAGTTGGAGAGGCCTCAGGCTGGGGCTGCCTCCTGCTTACCACCGATCCCAACCCAGATGGCTGCCAAGTCCTGCTCCCGGACTCCG
Seq A exon
GTGAGTTATTCCTTCTCTCTAGTGCCCTGTCACAAGCTGTCTCCTCTAGAGCTGTGAAGTGGTCAGATAGTGAAGTTGGAAGAGATCAGGATGCAGACTACTGCCTCTTGTAAGAGTAGCGCTCTGTGTTCAGTTGGGCCTTGCCTGATCCACCAGTCTCAGTTCTGCTACCCCAGCAGGGATCAACAAGGCACACCCCCTGGTGTACTGTTGGCATATTGTCATTCCAG
Seq C2 exon
GGTGAGATGCCTCTGACCTTCCAGGATGTGGCTGTGTACTTCTCCAGGGCGGAAGGGCAGCAGCTTAGCCCCCAGGAGCGGGCGCTGTACCGGGATGTGATGTTGGAGAACTATGGGAACGTGGCCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030308:ENSRNOT00000028184:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.700 A=NA C2=0.089
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=91.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGGGGCAGTTCTCAGTTT
R:
AGTACACAGCCACATCCTGGA
Band lengths:
308-538
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]