GgaINT0003587 @ galGal3
Intron Retention
Description
NA
Coordinates
chrUn_random:16877163-16877864:+
Coord C1 exon
chrUn_random:16877163-16877237
Coord A exon
chrUn_random:16877238-16877737
Coord C2 exon
chrUn_random:16877738-16877864
Length
500 bp
Sequences
Splice sites
5' ss Seq
CAGATATAC
5' ss Score
-0.7
3' ss Seq
AGGAGCCTCTTTGCTTGCAGGAG
3' ss Score
6.37
Exon sequences
Seq C1 exon
TGTCTGTGTTTTATTTTGGGCACCGTGTGCAATTTCTGGATTTCCTCTTTCCTCCAGCAGGAACTGGGATTACAG
Seq A exon
ATATACTGGAGGATGTGCAGGAAAGTGGTGTGGCCGAAAGGCGGTGGGGTAGTGCCTGTGTGGGAGAAATCAGAAGGGATGTCCCAGGAGGCCTGGAGCAAGGTCAGGGTGAGCNNNNNNNNNNATCCCAGAGGCAGTGCCCTGCAGATGGGCTGGGGAGGGCTGGGCTGGGACAGGGACTGCTGCGTTGCCTGCCAGCTGCCCTGCCCTTTCTCTTGTCCCTGCAGGCTCCAGTTCAGCTTGTGCCTTCCAGGCGTGATCGTCCCTGGCTGCAGGAGAGCAGCAAATGGCCACAGCACATCGGTGTCAGGTAGGGGCTGTGGGAAGCAGGCAGGAGAGGCCAAGGGGCGAGGGATGTGAATGCAGGGGGAGAGGGAGGTGGCCTCAGCCAGCATGCGTGTGCTGGGGCCGGAGAAGCGGCTGGGACGGGAGTTTGTGTCGTGTGCGAGCTGCTTCCCTGGGCCTTGGCTGTTGCCAGCAAGGAGCCTCTTTGCTTGCAG
Seq C2 exon
GAGCCCGTGAGCTTTGCGGAGGTGGCCGTGTATTTCAGCAGGGAGGAGTGGGCGCTGCTGGACCCTGCGCAGCGAGCGCTCTACCGGGACGTGATGCTGGAGACGTACCAGTGCGTGGCCTGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001891:ENSGALT00000002927:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTGTGTTTTATTTTGGGCAC
R:
CCAGGCCACGCACTGGTA
Band lengths:
198-698
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]