HsaINT0186958 @ hg38
Intron Retention
Gene
ENSG00000196378 | ZNF34
Description
zinc finger protein 34 [Source:HGNC Symbol;Acc:HGNC:13098]
Coordinates
chr8:144778038-144778525:-
Coord C1 exon
chr8:144778439-144778525
Coord A exon
chr8:144778165-144778438
Coord C2 exon
chr8:144778038-144778164
Length
274 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
AGTAGTCCCTGTCATTCCAGGCC
3' ss Score
4.81
Exon sequences
Seq C1 exon
CTCCTCAGTGACCAGCTCCTGCTCACTGCCCTCAGAAAGCCCAACCCTCAGGCAATGGCGGCCTTGTTCCTGTCTGCCCCACCCCAG
Seq A exon
GTGAGTGTCTGTCCTCCTGGGAGGAGTGAAGTTTTTACCCAGGGCTTTCCTTGGCAAACACTGCCAGGTGTCTCTGGTTTGGGATGCTGACATGATGGTAGGGGTGGCCCTGAGACCCCCATGCAGCCACCCCTTGGGATGTATTAGCTGGCTCGGTGGCAGATGGGTCAGGCCACCCACTGTGCTGCTGCCTTTAGCATGCTTCTGCTGCCTCCCCGCCCCTACCAGCCCACTCTGGACCACACCTGGGCTGCAGTAGTCCCTGTCATTCCAG
Seq C2 exon
GCCGAGGTGACCTTCGAGGACGTGGCTGTGTACCTCTCCCGGGAGGAATGGGGCCGCCTGGGCCCTGCTCAGAGGGGCCTCTACAGGGACGTGATGCTGGAGACCTACGGGAACCTAGTCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196378:ENST00000429371:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.007 A=NA C2=0.012
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTCAGTGACCAGCTCCTG
R:
CCAGTGAGACTAGGTTCCCGT
Band lengths:
214-488
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains