MmuINT1035673 @ mm10
Intron Retention
Gene
ENSMUSG00000054967 | Zfp647
Description
zinc finger protein 647 [Source:MGI Symbol;Acc:MGI:3052806]
Coordinates
chr15:76917635-76918010:-
Coord C1 exon
chr15:76917969-76918010
Coord A exon
chr15:76917762-76917968
Coord C2 exon
chr15:76917635-76917761
Length
207 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TCAAAATGCTGTCATTCCAGGCC
3' ss Score
5.31
Exon sequences
Seq C1 exon
ATGGCAGCAGCCGGGCTTCTACCGCTGCCAGCAGCACCACAG
Seq A exon
GTAAGTGGTCCCAAAAGCTTATTCAGTGGCTTACCCAAAGCTCCCGTAGTCCTCCTGTGCCCAGGCAGTCTGAATATCACCACTTCTCCTCAACTCTATCACCTCTGCCTATGGAGCTCACGTGACTCTAAGGGGGCCCTCGCCAATCTCCCACGTCACATGTACTGCCCTTCCAATGGACGGTTACTCAAAATGCTGTCATTCCAG
Seq C2 exon
GCCAAAGTGACCTTTGAGGATGTGGCTGTTCTGCTGTCTCAGGAGGAGTGGGCCCGCCTGGGCCCTGCTCAGCGGGGCCTCTACCGACACGTCATGATGGAGACCTACGGGAATGTAGTCTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054967:ENSMUST00000048854:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGCCGGGCTTCTAC
R:
CCAGTGAGACTACATTCCCGT
Band lengths:
165-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types