BtaINT0165332 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012353 | ZNF34
Description
zinc finger protein 34 [Source:HGNC Symbol;Acc:HGNC:13098]
Coordinates
chr14:1496729-1497904:-
Coord C1 exon
chr14:1497167-1497904
Coord A exon
chr14:1496856-1497166
Coord C2 exon
chr14:1496729-1496855
Length
311 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
AGCAGCTCCTGTTGTTACAGGCT
3' ss Score
4.86
Exon sequences
Seq C1 exon
CCCAGGGCCCTGGTCTGTGCTGGTGAGAGGAGGGTAGCGGCTCTCCCTTGGGAGGTGGGGAAGCAGGCAGAGCCCGCAGCTGCCGGAGGGCTGACGGCTGGGTCTGTCTGCTGAGCCCCTTGACCAGTGTGGTCAGGATTTGTTGACTTTCCTGTATAAATGTTTTACTCCAATAAAGAGCTTTAAAAATACAGAGAAGGTAAATATAGCTGTTGTAGCTTTCTTTTAATTACTGTTTCTTTGGTCTGCCTTATGTTTAGCCTTTCTGTGTATTTTATTTTAGGTTATATAGGTGCACTTTGTGTATCTACTTGGGGAGTTTTTTGCATGCAGTAGGTGAGTTTAATCCTTTTGCTTCAGTTACCCATCCATTGGACTTACCTCTGCTCATTTTGTATCTTTTGACTCCTAATCTTTGTCTTTGCTTTTCGCCTTCTGTTCAATTTTTTTAACTTCCCTTTCCTTCTCAGCCCTTAATGTGTTATCTTTATTCTTTCATGTAAAGTGAATAACTCTCCATTTTCCACCTGAATGAGATAACTTTGTGCCTGGGAGGAGGTAGGGGCAGATGATCTGAAATGATGCATGTGTCTGCAGGGAGCAGAGTCCGCTTGGGAGGCCGAGTGCTGAGGCCAACTGTGGGAGGGGCCAGGCAGTGATTGGCTCCTGCATCCATCCATCCCAGGAAGCCCAGGGTACCAGGGGATGGCAGCTTTGGATCTGTGTGCCCTGCCTCAG
Seq A exon
GTGAGCGTCTGTCCTCCCTGGGAGGCGGGAGGTCTTCTCCCAGGGCTTCCCTGTCTGCTCAGCCTTAGCAAACTGTCAGGCTTCTCTGGTGTGGGATGCTGAGGGGTGCTGAGCAGAGGAAGGGTGACCTTGGATTTGCCTAGCCTCCCTGAATGGGTTGGCTCAGCAGCCAAAGGGTCAGGGCCCACGCCTCCCCCAACTACTCCAGGCCACACATTGGGGGTCAGGCCTGTAGTTACCTCTGTGCTACTTCTCTAGCCCAGGGCCCAGCCTGAGGCACGCCTGGGCCTCAGCAGCTCCTGTTGTTACAG
Seq C2 exon
GCTGAAGTGACCTTCGAGGACGTGGCTGTGTTCCTTTCGCAGGAGGAGTGGGGCCTTCTGGGCCCTGCTCAGAAGGGCCTCTACAGGGAAGTGATGCTGGAGACTTACAGGAACCTGGTATCGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012353:ENSBTAT00000049839:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PU(9.1=27.3)
A:
NA
C2:
PF0135222=KRAB=FE(84.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCTTTCCTTCTCAGCCCTT
R:
TTCTGAGCAGGGCCCAGAAG
Band lengths:
358-669
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development