HsaINT0188032 @ hg19
Intron Retention
Gene
ENSG00000182983 | ZNF662
Description
zinc finger protein 662 [Source:HGNC Symbol;Acc:31930]
Coordinates
chr3:42947402-42949640:+
Coord C1 exon
chr3:42947402-42947660
Coord A exon
chr3:42947661-42949513
Coord C2 exon
chr3:42949514-42949640
Length
1853 bp
Sequences
Splice sites
5' ss Seq
CGGGTGTGG
5' ss Score
3.85
3' ss Seq
TTAAACACATGTTGTTTCAGGAG
3' ss Score
7.52
Exon sequences
Seq C1 exon
AAATATCTGTCCACCTAGGGTGCAGCGAGCTGGAGAGGAAGGGGTGGCCTAGAGCGCAGGGGAAGGATTCCTCCCCAGCCGCCTGCACCCCTACCCCGGTAGCGGTCCCTGGGATCGTCCGTGTCTCCAGGAGAACCGGACCGCTCTCCCCTCCCTCCCCGAGCGAGAAAGGAGGACCACAGAGATGCGGCGCCCTCCGCCGTCCTAGAGCAACCGGAGCGGCCCGAGCCCCGGCCTCCCGGATGCTGGGGCCTGGCGG
Seq A exon
GTGTGGAGCACGGGGAGTCGGGCGTGGGGCGGGCAGGGAGTGGAGTCGGGGTCTTACTCCGGTGGCTGCAGGGCGCAGGGTAGCCGTGTCAGGCCTGCCCAGGTGCAGAGCGCTCTTCCGCGACCCCAACAGCCTCTGGTCCGGTCTGGCGCGCCCTCGCTTTCCCAGAGGGCGACCTGGGCTATGGCGGCCGTGGCGCTGGCGAGCGGGACACGCCTCGGCCTTGTCCTCGAGCTGCTCCCGGGACAGCCCGCGCTGCCCCGGGCGCGCCGGGTGAGTGCGGGGCCGGAGCCTGGAAGCAGTCTTGGCCCTGCCCTGGGTTCTAGGCCCGGAGACGGGGTGGTGCGGCGGCTGGGAAATGGGGGTACAACCCAGAGTGAGGGGCCTCGAGGGACAGGCAGCACAGCGGAGTCGACACCCCTGGACCTGAGCCTCAAGGAGAGCAGACGTGCAGCGGCACGGGGTTGAGCCGACTGCTGGGGCAGAGCGCACAGAGTGCTGTCGGGGGCGATGAATGGCCAGAATTTCAGAGCTGCCTTTACAGAGCTGGTTATGTTTGAGCTGGGTATTAGGTTGAAAAGGAATTTGCAATGCAGGAGCAGGAAGGAAGAACTGGATATTCAGGCAAGAGTAGCCGCAGGTGCAAGGACACAGAACAGGGTGAGGAAAGAGTTTGGTTTCCCAATGCAATGGTGAGAGGATCGGAGATGAGAGTGGTGGTGGCTGATGATCCTGGCCAGGAAAGCTGGGTCTGTGAGTAGTGAATGGAATTGTCTGTAGTGCAGAGGAATGTGGACTCTATTAGGCAGACAAAGTTGAGCCAGCCAAAGCCTTGGAGCCCTGGAGTGCTGGATAAATAGCTGTGGAGACTTTCTAGTGCGCAAGGACTGAAGTGCAGTGGACCAGAATGGGCTCCTCCACAGTGTGGAGACTGAGACCCTGAAGGAGGCAGTGGCTGAGAATTACGGGAAGTCCCAACGGCTGGAGGTCAGCAGTATTTGTTTCTTAAGAGGATGAGAGAAAGAAGGTGCAGGAGCTGAGACTCCTAGAGATATAGAAAATGGGGACATGGAGATTGGGACGTGGGTAAGCAAGTGAGGTGGGATCTTTGTGAGAGTGTTGCGGGTGGTGGGGGTGCAGGGAGTAAAGTCACAACGAGGATCTGCCCTGTTGAGTACAGTGTTCAGAGCAACCTGAATGTTCTGAGGAGCCCTAGCTGCCTCTGTGGCTGGTGGCAGTGACTGGGGAGGACAAAGGAGGAAGAGTCCTATACAGGGGCAGCAGGGATGGCAGGAATGGGGACGGAAGGCAGTGTGGCATAACAGGCAAGAGCCAGAGTCAAACAGGCCTGGGTTCTGTCTCAGTTCTGGAACTTTGGGGGAAGTTAATCCCTCCGAGTCTCAGTTTCCTCTTCTAAAAAACGGATCTGATAGTAGGCTATGAGACATAACAAAGAATATATGTCAAGTGCTTGGCACAGGCTTAATAAATGATAGTTGTTATCAAGGGTGGGTGACCTCTGAAGGAGGACACATTGTGGAGAGAGGATGGGACCTAGAGCACAGATGTGGTTTGGGGTATAAGGATGAAACAAGAAAACTTTTGCAGACTCATGAAAAAGAGGAGAAAATGTTTGCTGAAATAAAGATGAAGAGACATGAGAAAATTGATGGCTGATGCCTTGTCTCTTTGTACATAGGAGGCAAAAATCTTCTGCTGATAGAGTTCCTGTAGACATTCAGAATCCAGAATCCCCACAGGCACCCCCACAGTACCTTTTGATGCCCTGTCTCCCCTTCCTCTTGGCCTGGTCCTGGGGTTGTCCTAGGGCATTTAAACACATGTTGTTTCAG
Seq C2 exon
GAGTCAGTGACCTTCGAGGATGTGGCCGTCTACTTCTCTGAGAACGAATGGATCGGCCTGGGCCCTGCTCAGAGAGCCCTGTACAGGGATGTGATGCTGGAGAATTATGGGGCTGTGGCTTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182983-ZNF662:NM_207404:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAAGGGGTGGCCTAGAG
R:
GCCACAGCCCCATAATTCTCC
Band lengths:
344-2197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)