HsaALTD1039218-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000182986 | ZNF320
Description
zinc finger protein 320 [Source:HGNC Symbol;Acc:HGNC:13842]
Coordinates
chr19:52893384-52897560:-
Coord C1 exon
chr19:52897520-52897560
Coord A exon
chr19:52897510-52897519
Coord C2 exon
chr19:52893384-52893619
Length
10 bp
Sequences
Splice sites
5' ss Seq
TCCGTGAGT
5' ss Score
8.93
3' ss Seq
GAGTCTCACTTTGTCGACAGGCT
3' ss Score
5.52
Exon sequences
Seq C1 exon
CGGCCCCTCTTTCTCAACCCAGAGCAAATTGAGACGTCCGG
Seq A exon
GTGAGAGTCC
Seq C2 exon
GCTGGAGTGCACTGGTGCCATCTCAGCTCACTGCAACTTCTGACTCCCGAGTTCAAGTGATTCTTTTGCCTCAGTCTCCCAAGTAGCTGGGACAACAGGGGCGTGCCGAGAAGCCCAGCTAATTTTGTACTTGTAGTAGAGAGCGGGTTTCACCACGCTGGCCAAAATTGTCTCAACCTCTTGATCTCATGATCCACCGCCTCACCCTCCCAAAGTGCTGGGATTACAGGCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182986-1-8,2-8-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCAAATTGAGACGTCCGG
R:
GCTACTTGGGAGACTGAGGCA
Band lengths:
108-118
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains