HsaINT1047951 @ hg38
Intron Retention
Gene
ENSG00000182986 | ZNF320
Description
zinc finger protein 320 [Source:HGNC Symbol;Acc:HGNC:13842]
Coordinates
chr19:52893779-52894220:-
Coord C1 exon
chr19:52894126-52894220
Coord A exon
chr19:52893857-52894125
Coord C2 exon
chr19:52893779-52893856
Length
269 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGA
5' ss Score
5.29
3' ss Seq
AGTTTCGCTGTGTCCCCCAGGCT
3' ss Score
7.38
Exon sequences
Seq C1 exon
TAGAGACAAGGTTTCACCATATTGGCCAGACTGTTCTCTGAACTCGACCTCAAGTGATCCACCCACCTCGGCCTCCCAGAGTCCTGGGATTACAG
Seq A exon
GTGTGAGCCACCTTGCCTGACCCCTCTTCACTAGTTTTTAATTTACATAATGAATTCTGATTTTGAACCCATGTATTGAGTTTTTCCATTTAGTTACTGTATTTTTATCCCGAGAGTTTCTGTGTAGTTCGTCATAATTTCTGTATGTTGGTTGTCCTTCTCATGTTCTTCATGCATTGCTTTTATGATTTCTTGAAGTTGTATCTTAATTCAGTGAGCTTCCAACTTTTTGGGGGGTGGAGGTGATGGAGTTTCGCTGTGTCCCCCAG
Seq C2 exon
GCTGGAGGGCAGTTGTGCGATCTTGATTCACTTCAACCTCTGCTCTCCGGGCTCAAGCAATTCTCCCACCTCAGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182986:ENST00000595635:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGACAAGGTTTCACCATATTGGC
R:
CAGGCTGAGGTGGGAGAATTG
Band lengths:
172-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains