HsaALTD1039487-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000183850 | ZNF730
Description
zinc finger protein 730 [Source:HGNC Symbol;Acc:HGNC:32470]
Coordinates
chr19:23102288-23134206:+
Coord C1 exon
chr19:23102288-23102393
Coord A exon
chr19:23102394-23102425
Coord C2 exon
chr19:23134080-23134206
Length
32 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TGTTTGTTTGTGTTTTTCAGGGA
3' ss Score
11.55
Exon sequences
Seq C1 exon
GAGAAGGCTGTAACATATTCCTGGTTGAGTATTCAGGTGATGTGACACTCCTGTTTGGTCCCTGCCTTCAGAAAAGATTGTGATGTACTCCTGGCCAAAAACCCAG
Seq A exon
GTGATGTGACTCTTATCTCTCCCTATTCACAG
Seq C2 exon
GGAGCGTTGACATTTAGAGATGTGGCCATAGAATTCTCTCTGGAGGAGTGGCAATGTCTGGACACCGAACAACAGAATTTATATAGAAATGTAATGTTAGATAACTACAGAAACCTGGTCTTCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000183850-5-10,6-10-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACACTCCTGTTTGGTCCCT
R:
ACATTGCCACTCCTCCAGAGA
Band lengths:
121-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains