Special

HsaALTD1039917-1/3 @ hg38

Alternative 5'ss

Gene
ENSG00000185177 | ZNF479
Description
zinc finger protein 479 [Source:HGNC Symbol;Acc:HGNC:23258]
Coordinates
chr7:57126592-57127596:-
Coord C1 exon
chr7:57127517-57127596
Coord A exon
NA
Coord C2 exon
chr7:57126592-57126718
Length
0 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
3' ss Seq
TTTGTTTGTTTGTTTTCCAGGGA
3' ss Score
10.47
Exon sequences
Seq C1 exon
GTGAGAGAAACTGGGAAAAACCCAGACTCTGCCATTTACTGGATATTTGACAAAATATTCTTACTAGGCTAGAAACATTG
Seq A exon
NA
Seq C2 exon
GGACTGTTGACATTCAGAGACATAGCTATAGAATTCTCTCTGGAGGAATGGCAATGCCTGGATTGTGCTCAGCGGAATTTATATAGAGATGTGATGTTAGAGAACTACAGAAACCTGGTCTCCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185177-6-10,7-10,8-10-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact

In the CDS, with uncertain impact

No structure available
Features
Disorder rate (Iupred):
  C1=0.174 A=NA C2=0.000
Domain overlap (PFAM):

C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)


Main Inclusion Isoform:
ENST00000620639fB30768


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGAGAAACTGGGAAAAACC
R:
GGAGACCAGGTTTCTGTAGTTCT
Band lengths:
203-304
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains