HsaALTD1041030-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000188372 | ZP3
Description
zona pellucida glycoprotein 3 [Source:HGNC Symbol;Acc:HGNC:13189]
Coordinates
chr7:76432927-76434155:+
Coord C1 exon
chr7:76432927-76433030
Coord A exon
chr7:76433031-76433281
Coord C2 exon
chr7:76434038-76434155
Length
251 bp
Sequences
Splice sites
5' ss Seq
CGAGTAACT
5' ss Score
1.86
3' ss Seq
CCGTTCTGTTTTCTTCCAAGCTG
3' ss Score
7.62
Exon sequences
Seq C1 exon
GCAGGGCAATGTGAGCAGCCAGGCCATCCTGCCCACCTGGTTGCCCTTCAGGACCACGGTGTTCTCAGAGGAGAAGCTGACTTTCTCTCTGCGTCTGATGGAGG
Seq A exon
GTAAGAGAAGAAGGCTGGGTGGGACATCTGTGGAAAGACCTGGGCCATCTCAGACCCCTGCCCTTGGCTGTGTCTTTTTTTTGTTTGTTTGGTTTTGGTTTTGGTTGGTTTTGGTTGGTTTTGGTTGGTTTTGGTTGGTTTTTGAGACAGTCTTGATCTGACCTCCAGGCTGGAGTGCAGTGGCACGATCTCAGCTCACTGCAGTCTCCACCTCCTGGGGTTCAAACGATTCTCCTGCCTCAGCCTCCCGA
Seq C2 exon
CTGTCTTGTCGACGGTCTCACTGATGCCTCTTCTGCATTCAAAGTTCCTCGACCCGGGCCAGATACACTCCAGTTCACAGTGGATGTCTTCCACTTTGCTAATGACTCCAGAAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188372-18-13,20-13-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=NA C2=0.035
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=FE(13.9=100)
A:
NA
C2:
PF0010018=Zona_pellucida=FE(15.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGGCAATGTGAGCAGC
R:
TGTTTCTGGAGTCATTAGCAAAGTG
Band lengths:
220-471
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains