HsaEX0074518 @ hg38
Exon Skipping
Gene
ENSG00000188372 | ZP3
Description
zona pellucida glycoprotein 3 [Source:HGNC Symbol;Acc:HGNC:13189]
Coordinates
chr7:76432927-76434155:+
Coord C1 exon
chr7:76432927-76433030
Coord A exon
chr7:76433470-76433647
Coord C2 exon
chr7:76434038-76434155
Length
178 bp
Sequences
Splice sites
3' ss Seq
CAGCTGACTGTGTCTTTCAGAGA
3' ss Score
6.56
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
GCAGGGCAATGTGAGCAGCCAGGCCATCCTGCCCACCTGGTTGCCCTTCAGGACCACGGTGTTCTCAGAGGAGAAGCTGACTTTCTCTCTGCGTCTGATGGAGG
Seq A exon
AGAACTGGAACGCTGAGAAGAGGTCCCCCACCTTCCACCTGGGAGATGCAGCCCACCTCCAGGCAGAAATCCACACTGGCAGCCACGTGCCACTGCGGTTGTTTGTGGACCACTGCGTGGCCACACCGACACCAGACCAGAATGCCTCCCCTTATCACACCATCGTGGACTTCCATGG
Seq C2 exon
CTGTCTTGTCGACGGTCTCACTGATGCCTCTTCTGCATTCAAAGTTCCTCGACCCGGGCCAGATACACTCCAGTTCACAGTGGATGTCTTCCACTTTGCTAATGACTCCAGAAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188372-'18-13,'18-10,21-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=0.023 C2=0.035
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=FE(13.9=100)
A:
PF0010018=Zona_pellucida=PU(47.2=98.3)
C2:
PF0010018=Zona_pellucida=FE(15.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGCAATGTGAGCAGCC
R:
GTTTCTGGAGTCATTAGCAAAGTGG
Band lengths:
218-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development