BtaEX6110384 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014834 | ZP3
Description
Bos taurus zona pellucida glycoprotein 3 (sperm receptor) (ZP3), mRNA. [Source:RefSeq mRNA;Acc:NM_173974]
Coordinates
chr25:34963801-34964376:+
Coord C1 exon
chr25:34963801-34963904
Coord A exon
chr25:34963986-34964163
Coord C2 exon
chr25:34964259-34964376
Length
178 bp
Sequences
Splice sites
3' ss Seq
ACCCCCGGCGTGCCTTGCAGAGA
3' ss Score
9.19
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
GCAGGGCAATGTGAGTAGCTGGGCCATCCAGCCCACCTGGGTGCCATTCAGGACCACAGTGTTCTCGGAGGAGAAGCTGGTTTTCTCTCTGCGCCTGATGGAGG
Seq A exon
AGAACTGGAGCGCCGAGAAGATGACGCCCACCTTCCAGCTGGGAGACAGAGCCCACCTCCAGGCCCAAGTGCACACTGGCAGCCACGTGCCCCTGCGGCTGTTCGTGGACCACTGCGTGGCCACGCTGACGCCAGACTGGAGCACCTCCCCTTACCACACCATCGTGGACTTCCATGG
Seq C2 exon
TTGTCTCGTCGATGGTCTCACCGATGCCTCCTCTGCTTTCAAAGCACCCAGACCCAGACCGGAGATCCTCCAGTTCACAGTGGATGTGTTCCGTTTTGCTAATGACTCCAGAAACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014834-'7-3,'7-2,8-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=FE(13.5=100)
A:
PF0010018=Zona_pellucida=FE(22.8=100)
C2:
PF0010018=Zona_pellucida=FE(15.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGCAATGTGAGTAGCTGG
R:
GTTTCTGGAGTCATTAGCAAAACGG
Band lengths:
218-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]