DreEX6017200 @ danRer10
Exon Skipping
Gene
ENSDARG00000016908 | zgc:171779
Description
zgc:171779 [Source:ZFIN;Acc:ZDB-GENE-071004-38]
Coordinates
chr3:31746106-31746664:-
Coord C1 exon
chr3:31746561-31746664
Coord A exon
chr3:31746326-31746503
Coord C2 exon
chr3:31746106-31746223
Length
178 bp
Sequences
Splice sites
3' ss Seq
CTAAAATTCTTTCTTTGCAGAGG
3' ss Score
8.2
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
ACTCATCAATGTGACCAGCAATGCCTTATTGCCCACTTGGCTCCCATATGGTGCTACCATGGTTGCAGAGGAGCTTTTGGTCTTCTCCCTCAGGATCATGACTG
Seq A exon
AGGACTGGCTATATGAGAGGCCTTCCAACGAGTTCTTCCTGGGTGATTTCATTAATCTTGAGGCTTCAGTAATGTCATACAATCACATTCCTCTGCGAGTGTTTGTTGACAGCTGTGTGGCATCTTCTGATCCTACTGTTGCTAATGCTCTCCGATACTCCTTTATTGAGAATAATGG
Seq C2 exon
ATGTCTAGTTGATTCTAAACTCACAGGCTCTAGCTCTAAGTTCATGGCTCGGACTCAAATGGACAAGCTGCACTTTCAGTTGGAGGCCTTCAGATTCCAGCAGGATCTTACAGGAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016908-'3-3,'3-2,5-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=FE(13.6=100)
A:
PF0010018=Zona_pellucida=FE(22.9=100)
C2:
PF0010018=Zona_pellucida=FE(15.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCAATGTGACCAGCAATGCC
R:
ACTCCTGTAAGATCCTGCTGG
Band lengths:
218-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]