GgaEX6007300 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BUH5]
Coordinates
chr10:1763096-1763760:+
Coord C1 exon
chr10:1763096-1763199
Coord A exon
chr10:1763388-1763565
Coord C2 exon
chr10:1763640-1763760
Length
178 bp
Sequences
Splice sites
3' ss Seq
CCTTGGCCTTCCTATTCCAGATG
3' ss Score
10.99
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
Exon sequences
Seq C1 exon
GAGGAGCAATGTGAGCAGCAATGCTGTCCGACCTACGTGGGTTCCCTTCCACTCCACGCTGTCAATGGAAGAGAAGCTGGTGTTCTCCCTGCGCCTCATGAGTG
Seq A exon
ATGACTGGAGGACCGAGAGGCTCTCCAATGGTGTCCAGCTGGGGGAAAGCCTGCATCTCCAGGCTGATGTCATGGCTGGGAACCACATACCACTGAGGCTGTTTGTGGATGACTGCGTGGCTACTCTGAGCCCTGACAGGAACTCCTCTCCCCGATATGCCCTGATTGACCTCAGCGG
Seq C2 exon
GTGCTTGGTGGATGGGAGAACAGATGATGCCACTTCAGCCTTCATATCTCCACGGCCAAGGCAGGAAACACTGCAGTTCATGGTTGATGCATTCAAGTTTGCAGGAGATGACAGAAACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001721-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.098
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=FE(13.5=100)
A:
PF0010018=Zona_pellucida=FE(22.7=100)
C2:
PF0010018=Zona_pellucida=FE(15.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGCAATGTGAGCAGCAA
R:
TCTGTCATCTCCTGCAAACTTGA
Band lengths:
219-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]