RnoEX6063947 @ rn6
Exon Skipping
Gene
ENSRNOG00000001434 | Zp3
Description
zona pellucida glycoprotein 3 [Source:RGD Symbol;Acc:620606]
Coordinates
chr12:23737575-23739836:-
Coord C1 exon
chr12:23739733-23739836
Coord A exon
chr12:23739468-23739651
Coord C2 exon
chr12:23737575-23737692
Length
184 bp
Sequences
Splice sites
3' ss Seq
CCCTCTCTGTGCCCCTTCAGAGG
3' ss Score
10.27
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
GCAGGGCAATGTGAGCAGCCACCCTATCCAACCCACCTGGGTTCCCTTCAGCGCTACTGTGTCCTCGGAGGAGAAACTGGCTTTCTCTCTTCGTCTGATGGAGG
Seq A exon
AGGACTGGAATACTGAGAAATCATCTCCCACCTTCCACCTGGGAGAGGTAGCCCACCTCCAGGCGGAAGTCCAGACCGGAAGCCACCTGCCTCTGCAGTTGTTTGTGGACCACTGCGTGGCCACGCCTTCACCGTTGCCAGGCCAGAACTCCTCCCCCCATCACTTCATCGTGGACTCCCATGG
Seq C2 exon
ATGCCTTGTGGACGGTCTATCTGAGAGCTTTTCAGCATTTCAAGTCCCTAGACCCCGGCCAGAGACTCTGCAGTTCACAGTGGACGTATTCCATTTCGCCAACAGCTCCAGAAATACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001434-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.048 C2=0.000
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=FE(13.5=100)
A:
PF0010018=Zona_pellucida=FE(23.5=100)
C2:
PF0010018=Zona_pellucida=FE(15.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGCAATGTGAGCAGCC
R:
CGTATTTCTGGAGCTGTTGGC
Band lengths:
221-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]