GgaEX6007300 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr10:1641552-1642216:+
Coord C1 exon
chr10:1641552-1641655
Coord A exon
chr10:1641844-1642021
Coord C2 exon
chr10:1642096-1642216
Length
178 bp
Sequences
Splice sites
3' ss Seq
CCTTGGCCTTCCTATTCCAGATG
3' ss Score
10.99
5' ss Seq
CGGGTAAGG
5' ss Score
10.17
Exon sequences
Seq C1 exon
GAGGAGCAATGTGAGCAGCAATGCTGTCCGACCTACGTGGGTTCCCTTCCACTCCACGCTGTCAATGGAAGAGAAGCTGGTGTTCTCCCTGCGCCTCATGAGTG
Seq A exon
ATGACTGGAGGACCGAGAGGCTCTCCAATGGTGTCCAGCTGGGGGAAAGCCTGCATCTCCAGGCTGATGTCATGGCTGGGAACCACATACCACTGAGGCTGTTTGTGGATGACTGCGTGGCTACTCTGAGCCCTGACAGGAACTCCTCTCCCCGATATGCCCTGATTGACCTCAGCGG
Seq C2 exon
GTGCTTGGTGGATGGGAGAACAGATGATGCCACTTCAGCCTTCATATCTCCACGGCCAAGGCAGGAAACACTGCAGTTCATGGTTGATGCATTCAAGTTTGCAGGAGATGACAGAAACTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001721-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.098
Domain overlap (PFAM):
C1:
PF0010018=Zona_pellucida=FE(13.5=100)
A:
PF0010018=Zona_pellucida=FE(22.7=100)
C2:
PF0010018=Zona_pellucida=FE(15.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGCAATGTGAGCAGCAA
R:
TCTGTCATCTCCTGCAAACTTGA
Band lengths:
219-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]