HsaALTD1041337-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000196152 | ZNF79
Description
zinc finger protein 79 [Source:HGNC Symbol;Acc:HGNC:13153]
Coordinates
chr9:127424703-127428920:+
Coord C1 exon
chr9:127424703-127424803
Coord A exon
chr9:127424804-127424910
Coord C2 exon
chr9:127428832-127428920
Length
107 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGTT
5' ss Score
6.3
3' ss Seq
GTTTTTTTCTCTTTCTCTAGTAC
3' ss Score
9.49
Exon sequences
Seq C1 exon
CCTGCAGAACGGGGTGGGGGCTGCTGTAGATAGACCCTTACGCCCAGAGAACTGCTGGGAGGCTGTGGCGCGAGGCGGGACTCAAATGCTGGAGGAAGGAG
Seq A exon
GTGAGGAGTGGTAGAGGGAGCGATTGTCAAGAGATCGGCTGCTGCTTCGTTTGCCCACGACTGCCGCTGTGTGAGCCGAATCAGAACTCTCTTTATCTCTCCTACAG
Seq C2 exon
TACTGCCTTCCCCAGGCCCTGCCCTTCCCCAAGAGGAAAACACAGGAGAGGAAGGAATGGCTGCTGGTCTCCTCACAGCTGGGCCCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196152-0-3,1-3-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.527
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCAGAACGGGGTGGG
R:
GGCCCAGCTGTGAGGAGA
Band lengths:
186-293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains