HsaEX0074375 @ hg38
Exon Skipping
Gene
ENSG00000196152 | ZNF79
Description
zinc finger protein 79 [Source:HGNC Symbol;Acc:HGNC:13153]
Coordinates
chr9:127424374-127428920:+
Coord C1 exon
chr9:127424374-127424910
Coord A exon
chr9:127428552-127428660
Coord C2 exon
chr9:127428832-127428920
Length
109 bp
Sequences
Splice sites
3' ss Seq
TTATCATCCCCATTTTGCAGATG
3' ss Score
10.5
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
Exon sequences
Seq C1 exon
CAGGACCTGGCGTTGGGCGGTACTTGGACAGCGGTTCTTGAGCTCTCGCGGTTGCCGGTAGATTGTTGCCAGTTGCCAGTTGCCAGTCGTTTTTCGGAAAGCTGGCAGCGGCTTTTTCACCGGGTTCTGCTTGAGGCCGAGCCAAAGAGTGGCTGTGACTCGGGAGACGGAGTGGAACACCCGGCTGGGCAGGCCCGGACAGCTCCCGCGACCCAGCACCGCAGGATCAGACCGTGCCTCTGCGGGGAGAGGCTGGAGAGGAAGAGTCCGGCCTGGGAGCCGTCAGAGCAGCCCTGCAGAACGGGGTGGGGGCTGCTGTAGATAGACCCTTACGCCCAGAGAACTGCTGGGAGGCTGTGGCGCGAGGCGGGACTCAAATGCTGGAGGAAGGAGGTGAGGAGTGGTAGAGGGAGCGATTGTCAAGAGATCGGCTGCTGCTTCGTTTGCCCACGACTGCCGCTGTGTGAGCCGAATCAGAACTCTCTTTATCTCTCCTACAG
Seq A exon
ATGAGAAAAATGAGACTTAGAGAGGTTACGTGATTTGCACACTGCTGCTGAGTGGTGGATCATGGATACTTGAGAGTCTGTGAACACTCTAATGCCTCCCTACATCTGA
Seq C2 exon
TACTGCCTTCCCCAGGCCCTGCCCTTCCCCAAGAGGAAAACACAGGAGAGGAAGGAATGGCTGCTGGTCTCCTCACAGCTGGGCCCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196152_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.527
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTACGCCCAGAGAACTGCTG
R:
GAGACCAGCAGCCATTCCTTC
Band lengths:
243-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development