HsaEX0074375 @ hg19
Exon Skipping
Gene
ENSG00000196152 | ZNF79
Description
zinc finger protein 79 [Source:HGNC Symbol;Acc:13153]
Coordinates
chr9:130186661-130191199:+
Coord C1 exon
chr9:130186661-130187189
Coord A exon
chr9:130190831-130190939
Coord C2 exon
chr9:130191111-130191199
Length
109 bp
Sequences
Splice sites
3' ss Seq
TTATCATCCCCATTTTGCAGATG
3' ss Score
10.5
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
Exon sequences
Seq C1 exon
CAGGACCTGGCGTTGGGCGGTACTTGGACAGCGGTTCTTGAGCTCTCGCGGTTGCCGGTAGATTGTTGCCAGTTGCCAGTTGCCAGTCGTTTTTCGGAAAGCTGGCAGCGGCTTTTTCACCGGGTTCTGCTTGAGGCCGAGCCAAAGAGTGGCTGTGACTCGGGAGACGGAGTGGAACACCCGGCTGGGCAGGCCCGGACAGCTCCCGCGACCCAGCACCGCAGGATCAGACCGTGCCTCTGCGGGGAGAGGCTGGAGAGGAAGAGTCCGGCCTGGGAGCCGTCAGAGCAGCCCTGCAGAACGGGGTGGGGGCTGCTGTAGATAGACCCTTACGCCCAGAGAACTGCTGGGAGGCTGTGGCGCGAGGCGGGACTCAAATGCTGGAGGAAGGAGGTGAGGAGTGGTAGAGGGAGCGATTGTCAAGAGATCGGCTGCTGCTTCGTTTGCCCACGACTGCCGCTGTGTGAGCCGAATCAGAACTCTCTTTATCTCTCCTACAG
Seq A exon
ATGAGAAAAATGAGACTTAGAGAGGTTACGTGATTTGCACACTGCTGCTGAGTGGTGGATCATGGATACTTGAGAGTCTGTGAACACTCTAATGCCTCCCTACATCTGA
Seq C2 exon
TACTGCCTTCCCCAGGCCCTGCCCTTCCCCAAGAGGAAAACACAGGAGAGGAAGGAATGGCTGCTGGTCTCCTCACAGCTGGGCCCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196152_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.950
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTACGCCCAGAGAACTGCTG
R:
GAGACCAGCAGCCATTCCTTC
Band lengths:
243-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)