HsaALTD0007516-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000196152 | ZNF79
Description
zinc finger protein 79 [Source:HGNC Symbol;Acc:13153]
Coordinates
chr9:130190831-130191199:+
Coord C1 exon
chr9:130190831-130190939
Coord A exon
chr9:130190940-130190961
Coord C2 exon
chr9:130191111-130191199
Length
22 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
3' ss Seq
GTTTTTTTCTCTTTCTCTAGTAC
3' ss Score
9.49
Exon sequences
Seq C1 exon
ATGAGAAAAATGAGACTTAGAGAGGTTACGTGATTTGCACACTGCTGCTGAGTGGTGGATCATGGATACTTGAGAGTCTGTGAACACTCTAATGCCTCCCTACATCTGA
Seq A exon
GTGAGTTGATGGAATTTCTGAG
Seq C2 exon
TACTGCCTTCCCCAGGCCCTGCCCTTCCCCAAGAGGAAAACACAGGAGAGGAAGGAATGGCTGCTGGTCTCCTCACAGCTGGGCCCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196152-1-1,2-1-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.950
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTGCACACTGCTGCTGAGT
R:
GTTTTCCTCTTGGGGAAGGGC
Band lengths:
118-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)