HsaINT0188409 @ hg19
Intron Retention
Gene
ENSG00000196152 | ZNF79
Description
zinc finger protein 79 [Source:HGNC Symbol;Acc:13153]
Coordinates
chr9:130186653-130191199:+
Coord C1 exon
chr9:130186653-130187082
Coord A exon
chr9:130187083-130191110
Coord C2 exon
chr9:130191111-130191199
Length
4028 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
GTTTTTTTCTCTTTCTCTAGTAC
3' ss Score
9.49
Exon sequences
Seq C1 exon
GTGGCGCCAATCAGGCGCGTCCCTCTGGCGCTGGAGCCAGGACCTGGCGTTGGGCGGTACTTGGACAGCGGTTCTTGAGCTCTCGCGGTTGCCGGTAGATTGTTGCCAGTTGCCAGTTGCCAGTCGTTTTTCGGAAAGCTGGCAGCGGCTTTTTCACCGGGTTCTGCTTGAGGCCGAGCCAAAGAGTGGCTGTGACTCGGGAGACGGAGTGGAACACCCGGCTGGGCAGGCCCGGACAGCTCCCGCGACCCAGCACCGCAGGATCAGACCGTGCCTCTGCGGGGAGAGGCTGGAGAGGAAGAGTCCGGCCTGGGAGCCGTCAGAGCAGCCCTGCAGAACGGGGTGGGGGCTGCTGTAGATAGACCCTTACGCCCAGAGAACTGCTGGGAGGCTGTGGCGCGAGGCGGGACTCAAATGCTGGAGGAAGGAG
Seq A exon
GTGAGGAGTGGTAGAGGGAGCGATTGTCAAGAGATCGGCTGCTGCTTCGTTTGCCCACGACTGCCGCTGTGTGAGCCGAATCAGAACTCTCTTTATCTCTCCTACAGGTAGTTGGAGACAATCATTTTTTCTTTCTTTGCCCATGACACAGCCCCAGGAGATCCTGAGAACATGTGCCCCTACAGTCCTTTTTTGAGTAAAGAATTCGGGGGTCAAAAAAGTTTGAGGACCTCAGACTGCGTGATTTCTGAGTATTGTACCACGTACCCCAGTCTGCCCAGATGGACCAATGACAGTGGAGAGTAGGGAGAAGTGGGTTCCTGGGGACTCCTCTGTCACTTTTCTCCTTCTAGCCCTTCTCGAAGCAGCCAGGAATGCCTGGAAGCCCGGGAAAGTTTGGGGGCAGGCCAGCCCAGTAGGATTGTGAAGTTGTGGAGGACAGGGGAATTTGCAGTTAGAAGGCACAGGTTCTTGTGAAAGCTGTGAGGTACCAGCCAGGTCTCTTAACCTGTATTTCTCCATGGAAGAAAGGACAAAATAATGTTAACTACTTTGTTTACCTCTGAGAATTGTAATTCTCAAATGAAATAACACTTTTGAAAGCACCCTGAATGTGGTACAGAACAAATGTGTAAGCAGGCAACCTCTTTTAAGTCTTAACCACCAACACCTCTGCTGTTCACCCCTAGATCAACTGTATTTGGTCTTTTACTCTACAAGTGCAATTTTACATCCAGAATTTGGTGCTGTCCCCAAGATCAAGAGGTCCTTGTATTTGTTTTTTTTTGTTTGTTTTGTTTTGTTTTTGAGACAGAGTCTCGCTCTGTCGCCGAGGCTGGAGTGCAGTGGCGCAATCTCAGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGCCCGACACCAAGTCCAGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAAGCTGGCCTCAAACTCCTGACCTCAAGTGATCCACTGGCTTCGGCATCCCAAAGTGCTGGGATTACAGGCGTGAGCCACTGCTCCTGGCCAAGAGATCCTTATATTTGGTCTTGCACTTGAAGAGTAGAGAGTGCAATTTCACATCCAGTATTTTGTGTTATCTTCCCCAGACACCTGGGAAAGCAGAGCAGATGGGTCGTCATCTTCCCCATACTGCAAAACAGGAAAGGAAGTGCTGTCAGGTTAGATAACTCTCAGTAACAGAAGGTCTGTCCTAAGATCAGGATCCAGATCTATTTATTTATTTTATTCAGATATCATTCACATACCATAATATTCACCCTTTTAAAGTGAACAATTCAGTGGTTTTTAGTATTTTCACAAAGTCTTGCAACCATCACTATTTAATTCCAGAACATTTTTGTTATCTGAAGAAGAAACCCCATAGCCTGTAGCAGTGACTCCCCAGTCCCTCATTTCTCCACAAGTCACTGGCAACCACTAATCTGCTTTCTGTCACTATGGATTTGCCTAGGACATTTCAAATAAGTGGACTCATAATATGTGACTTTTTTTTTTTTTTTTTTTGAGACGGAGTTTTGCTCTTGTTGCCCAGGCTGGAGTGCGATGGTGCGATCTCAGCTCACCGCAACCTCCGCCTCCCGCGTTCAAGTGATTCTCCTGCCTCAGCCTCCCGAGTAGTTGGGATTACAGGCACCCGCCACCACACCCAGCTAATTTTTTGTATTTTTAGTAGACACAGGGTTTCACTGTGTTGGCCAGGCTGGTCTTGAACGCCTGACCTCAGGCAATCCACCTGCCAATATGTGACCTTTTGTGTCTCGCTTAGCACATCATTTTCAGGGTTCATCCAGGTTATAGCATGCGTCAGTACTTCATCCCTTTTTGTGGTAGAATGATATTCCATTGTATGGAGAGATCACATTTTGTGTATCCATTCTTCAGTGAATTTTTGTGTGTGTGTATGTTTGATTTCTCTTGGGCATATACTTAGAAGTGGAATTACTGCGTCATACAACCCTCTTTGACTTTCACAGGAACTGCTGAACTTTTTCCACTGTGGCGGCATCATTTTCTATTCTCAGCAGTGTATGAGGTTTCCAGTTTCCTTACATCCTCATCAACACTTGTTATTCTCCATCTTGTTTATTATAGTCATGTTAGTAGGTGTGATGTGTTCTCTCATTGTGGTTTTCATTTGCTTTTCCCCAATGACTAATGATGTTCAGTTTCATGTAGGGAGTGGCTATTTGTATCTCTTGCTTGGAGAAATATCTGTTCAAATCTTTTGCCCATTTAAGAATTTAGTAGGGCCAGGCACAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCTAGGCAAGCAGATTACTTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACGTGGTGAAACCCCGTCTACTAAAAAAAAAAAAAAAAAAAGTTAGCCGGGCGTGGTGGTGCGTGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGTAGGAGAATCGCTTGAACCTGGGAGGTGGAGGTTGCAGTGAGCCAAGATTGTGCCATTGCACTCTAGTCTGGGCAACAAAAGCGAAACTCCGTCTCAAAAAAAAAAAAAACACAAAACATACACACAGAAAATTATGTGCTACGCCAGCATTTCGGCCTCCCAAAGTGCTGGGATTAGAGGTGTGAGCCACTGTACCCAGTCAATAACTAAATTCTTTTTTTTTTTTTTTTTGAGGCAGAGTCTTGCTTTGTTGCCCACGCTGGAGCGTAATGGCGTGATCTCAGGTTACTGCAACCTCTGCCTCCTGGGCTCAAGCCATCTTTCCACCTCAGCCTCCCAGGTAGCTGGGCCTGCAGGCATGCGCCACCACGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCATTATGTTGCCCAGGCTGATCTCGAACTCTTGGGCTCCCTAAGTGCTGTGATTATAGATGTGAGTCGTTTTCACTCAGCCTCTTCACTTTCTTGACAGAGCCTGTTGGAGCACAAAGTTTTTAATTTTGAAGATATCCAACTTACCTATTTTCTCTTTTGCTGCTTGTGCTTTTGGTGTCATATCTAAGAAATCATTGCCTAATCCAACCTCTCAAAGATGTATGGTTTTCTTCTAAGAGTTCTACCCCTTTTTCTTTTTTTTTGAGATAGTGTCTCACTCTGTCAACCAGGCTGCAGTGTAGTGGTGTGATCACAACTTGCTGCAGCCTCGACCTCCCTGGCTCAAGCGATCCTCCCACCTCAGTCCCCCAAGTAGCTAGGGCTATGGGTATGCGCTACCAAGCCTGGCTAATTTTTGTATTTTTAATAGAGACGGGGTCTCGCCATGTTGCCCAGGCTGGTCTCGAACTCCTGGGCTCAAGCAGTCTGCCCACATCAGCCTCCCAAATTGCTGGGATTACAGGCATAAGCCACCGCACCTAGCCAAGAGTTACTTCTTAACTTTAGGTCTCTGATCTATTTTGGGTTAATTTTTATATATGGTGTGAAGTGAGACTCTCTGCCCAGCCCTCTTCTTTTCATTTAAGCAAATGCCTTAAATTTGCAGAGTCACTTTCTCCAAAGAACTAAGTAATAGATAATCTCTTTAAACTGTATACTTATGTGCTGGGCATTTGCCGACTGCTTTATCTGTATGTTCCTTTAATCTTCACAGCAGATTATCCCTTACAAGGGTTTATCATCCCCATTTTGCAGATGAGAAAAATGAGACTTAGAGAGGTTACGTGATTTGCACACTGCTGCTGAGTGGTGGATCATGGATACTTGAGAGTCTGTGAACACTCTAATGCCTCCCTACATCTGAGTGAGTTGATGGAATTTCTGAGGTAGGAGGGAATGGAGAAATTTACATCACACTACAGGTCTGCAGATTCAGCCCACGTGCCCTGATACCTGCTATGTCCCCTCTTCACAGTGAGAACTGGTGACTTCATAAACTGCTTTTAACATTATTAGTTTTTTTCTCTTTCTCTAG
Seq C2 exon
TACTGCCTTCCCCAGGCCCTGCCCTTCCCCAAGAGGAAAACACAGGAGAGGAAGGAATGGCTGCTGGTCTCCTCACAGCTGGGCCCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196152-ZNF79:NM_007135:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.950
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)