HsaALTD1042431-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000197808 | ZNF461
Description
zinc finger protein 461 [Source:HGNC Symbol;Acc:HGNC:21629]
Coordinates
chr19:36656448-36658425:-
Coord C1 exon
chr19:36658336-36658425
Coord A exon
chr19:36658299-36658335
Coord C2 exon
chr19:36656448-36656543
Length
37 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAAG
5' ss Score
4.05
3' ss Seq
ATTTCTTTTCTTATAACTAGGAC
3' ss Score
9.79
Exon sequences
Seq C1 exon
GAGTTGGTGATGTTCAGAGATGTGGCTATAGATGTCTCTCAGGAGGAATGGGAATGCCTGAACCCAGCGCAGAGGAATTTGTACAAGGAG
Seq A exon
GTGATGTTGGAGAATTATAGCAACTTGGTGTCACTTG
Seq C2 exon
GACTTTCTGTTTCTAAGCCAGCCGTAATCTCCTCATTGGAGCAAGGGAAGGAGCCCTGGATGGTTGTGAGGGAAGAGACAGGAAGATGGTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197808-4-6,5-6-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PU(71.1=90.0),PF139001=GVQW=PU(5.1=6.7)
A:
NA
C2:
PF0135222=KRAB=PD(6.5=22.2)
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGGAATGGGAATGCCTGA
R:
CTTCCCTCACAACCATCCAGG
Band lengths:
125-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains