HsaINT0187325 @ hg38
Intron Retention
Gene
ENSG00000197808 | ZNF461
Description
zinc finger protein 461 [Source:HGNC Symbol;Acc:HGNC:21629]
Coordinates
chr19:36656448-36658425:-
Coord C1 exon
chr19:36658299-36658425
Coord A exon
chr19:36656544-36658298
Coord C2 exon
chr19:36656448-36656543
Length
1755 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAAG
5' ss Score
4.05
3' ss Seq
ATTTCTTTTCTTATAACTAGGAC
3' ss Score
9.79
Exon sequences
Seq C1 exon
GAGTTGGTGATGTTCAGAGATGTGGCTATAGATGTCTCTCAGGAGGAATGGGAATGCCTGAACCCAGCGCAGAGGAATTTGTACAAGGAGGTGATGTTGGAGAATTATAGCAACTTGGTGTCACTTG
Seq A exon
GTAAAGTTATCTAAAAATTAAGAACCTGACAATTCAGAATTCCGCTAACAATTCACAATCTACTTCTTGGAATTTCTGCTTTCCCCCCTATTAATTTAGGGCTAGCTTTCAAATAACTGGATGAATTTTCTCTTTATGTATTGTAGAAACCAGCACAGCTAAATGGAGGTACATTTTCATTTTCCCCATCCTTACACGTTCTTTTGGTCCTTTCTTATAATAACTCCTCCTTGATGTTTAAGGGGCAGAATTGGAAATCTGCAATGTTAAAGCATAACACTGTCAAAGAAAGCAGACTCTGTCTTTTGTTTCACTTCCACTGTGCTAAATCTGCTAGTGTACTAGCATAAGATTAAAACTAGACACATGGGTTCCAGGAGTGAAGCTTTTTTCTTTCCTGGGTAATAGAGTGATAGGCTGGAGTAATAAAGGTTCATTTACTATTCTCAAATGAGCACCACTCCATTTCCTATAATAAATGTAATCTTTCACTTTTTATTTTATTTATTTATTTATTTTTGAGACGGAGTTTCGTTCTTATTGCCCAGGCTAGAGTGCAATGGCGTGATCTCGGCTCACCACAACCTCTGCCTCCCAGCTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGTGATTACAGGCATGTGCCAACACGCCTGGCTAGTTTTGTATTTTTAGTAGAGATGTGTTTTTTCCATGTTGGTCAGGCTGGTCTCAAACTCCCGACCTCAGGTGATCCACCTGCTTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCACCTGGCCTTTTTAATTTTTTTTTGAGACAGAGTTTCACTTTTGTTGCCCAGGCTAGAGTGCAATGGCATATCTTGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCCCGCCACCACGCCCAGCTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAATTCCTGATCTCAAGTGATCCACCCGTCTTGGCCTCCCAAAATGCTGGGATTACAGGTGTGAGCCACCGCGCCTGACCTGTACTCTCTTTTAAGTGATTTGCCTTTGGAAGTTATTTTTAAAGAACTTTGTACAGTTAACATTAAAAAAAAAAAGGAGGCTGGGTGCTGTGGCTCATGCCTGTAATCCCAGCACTTTGGGACGCTGAGGCAAGTGGATCACCTGAGGCCAGGAGTTTGAGACCAGCCTGGCCAATATGGGCCAAACCCCGTTTCTACTAAAATACAAAAATTAGCCAGGCAGAGTGGTGTGCGCCTATAATCCCAGCTACTTAGGAGGCTGAGGCAGGAGAGTCACTTGAACCCGTGAAGTGGAGGTTGCAGTCAGCCAAGATTGTGCCATTGCACTCCAGCCTGGACAACAAGAGCAAAACTCCATCTCAAAAAAAAAAAAAAGAATAAATATCTCAAGAAGCTTCTTTTTTTTCCTCACAGCAAAAAAGAGAAACCTTACATAAATTTAAGTACTATTTTATCGCCTGTTTGTTTGCTTTGTTTGTTATGATCCTGTGTTCATCTGAATATGAGTGTTTCATCTCTTCTCCTTTATTTCCTCTGTATCCCTTATCAAGTACCATTTTTATCTGTGATTTATTTTTATTTTAATCAGTTCTAAATCACTGTATTTGGATACATTCATTTCCATCTCATCTCAATTTCTTTTCTTATAACTAG
Seq C2 exon
GACTTTCTGTTTCTAAGCCAGCCGTAATCTCCTCATTGGAGCAAGGGAAGGAGCCCTGGATGGTTGTGAGGGAAGAGACAGGAAGATGGTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197808:ENST00000588268:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=100.0)
A:
NA
C2:
PF0135222=KRAB=PD(6.5=22.2)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGATGTTCAGAGATGTGGC
R:
GGCACCATCTTCCTGTCTCTT
Band lengths:
216-1971
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains