MmuINT0179930 @ mm9
Intron Retention
Gene
ENSMUSG00000058447 | Zfp82
Description
zinc finger protein 82 [Source:MGI Symbol;Acc:MGI:1890753]
Coordinates
chr7:30847248-30851386:-
Coord C1 exon
chr7:30851260-30851386
Coord A exon
chr7:30847338-30851259
Coord C2 exon
chr7:30847248-30847337
Length
3922 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
3' ss Seq
GTTTCTTTCCTTCTAAGCAGGAT
3' ss Score
8.59
Exon sequences
Seq C1 exon
GTGTCAGTGGTGTTCAGTGATGTGTCCATAGCCTTCTCGCAGGAGGAGTGGGAGTCCCTGGACTTAGAACAGAGGAATTTGTACAAGGATGTGATGATGGAGAACTACCACAATGTGGCCTCGCTAG
Seq A exon
GTAAGCTTGTGTCTCTAGCAACGTTGTATTCTCTGCAATAGCCATGCCCTCTGGAAATGTCCACAACAGCTTTCAAGAAACTATTCGAGCCGGGCATGGTGGTGCACGCCTTTAATCCCAGCACTTGGGAGGTAGAGGAAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGAGCTATACAGAGAAACCCTGTCTCAAAAAACCAAAAAAAAAAAAAAAAAAAAAGAAGAAACTATTCGATTTTGCATGTATCTATCTCTCTATCTCTTTATTGTTTATATCTCCATGTATCTATCTATCTACTGTGAGTGTTTGGGGGAGGGCATGCATGTATTGTAGCAAGCATGTGGAGGTCAGAGGACATTTGAAAATTGGTTCTCTTCTTACACTGTATGCATTCTGGAATGAACTCAGGTTGGGAGTAAGTGCCCTTACCCCACGCCATCTCATCTTTTTTTTTTTTTTTTTAAGATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGATACCCCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCTCCCCCCCCACCCCCCGATATTCCTAAATCTATATTTCATCTTTGCTGCCCTGGACCGTGCTGGGCAGCCCTCCTGGGGCCGCTTTCCTCCTGCACCTACATGTTGGCTGTGTCTCCCTCCTGCACCTTCTGGCATAGTCCATCTCTTATACCCTCATCATGGTAGACTCCTCTCTTCCTCTTTCCTCAGTCCCTCCCCAGGAATCCTAAAAGTCCTGCCTCTGTCTCCCTGCCCAGCCCTTGGCCTCTGGTAACTTTATTAACAAGTCAAAAACCAACTAGGTACAGGCTTCCTTTAGTCCTAAGTGCCGGCCGGACACTGCAAGCAGGTTTTTGGGTAGCATAATTAGCATGAGAACACAAACCACTACACACACTAAACCAAAGTATAGAAAACATCCCGCCGTGCAGTGTCACAGTGTGTCCCACAGTATATCCCTCGGTCCACACATCTCACTTGTAAATGGTCGTTGCAATGAGTCATTGGTCTGGTCTGAGATCTCTGGCACTGTTACACCATCAGTATTGGATCCTCACTGAGAGGGACTCTGTCAGTTTATCCTGTTGCTGCCCTGTGTCGTGGAGATCCTGTATCTTTGGATTAGCAGGATTGGCCCTTTCATGGGTCCCAACCATTCGCAGATGAGCTACATTTTGGAGTGGGCCAACTCAGAGCCCTGGATTTGAGCCTGGGTAGTAGCTGGGCTGGTCAGCCCACTGGCTCTTCCCTCTCCACACCACCAGGGGGAGCTCTCCAGCTAGGCCACCCCATGCTGCTGTCCGCAGGAGGCAGGGTCAGCTCTCCCTAAGAGCCAGCTCACCGTCATCCACTTCTCCAGAGTCAGCTTTACTGTGCTGCCCAGTCAAGGAGTGGGGCCTGCTCTCCCAAGTACTGCTGCCGTCCAGGGGCTGGGCCAGCTCTCCACCCTCACACCCTTAGGGCTGGCTCACCATGCCTGTGCCATCAGGGCCAGCTCCACTGTGTTGCCCAGGCAGGGCCCATCCTCCTAACTGCCCCAGGTTGTGAGTGGTGGAGGGTTAGTGGAGGGAGCATCACCCCTGCATCCATGCCACCTCACAGCAGATGAGCGACAGGGCCAGCTGGGAGCTAGATTTTAAATGCGGGTGAATAATAGCCTTGCCATAGCAAAGAAAACAAATTGTTTTGTCTTTTGTTTGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCTTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTAGTCTTGAACTCACATAGATCTGCTTGGCTCTATGTTCTGTGTGCACCATCATGGCCTGGCTCAGATTTTACTTTTCAAATCTTTGTTTATGTACATGGGGAGGGAGCCATGTCTATGCAGTGATGTGTGGAGATCAGAGGGTTCTCCCCCACCATGTGGGCCCTGGGGACTGACTCAGGTCATCAGGCTTGATTGAAAAGTGTGAGTGAGGTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTTGAAAAACCAAATATATACACACACACACACACACACACACACACATATATATATGTCTATCTGTCTATCTATAGTGTGTATATTTGGTATGTGTATATATATGGTATGTATATTTGGTATGTACATACACACACACACATATATATATATATATTTATATGTATAAGAAATAGAAGTAAGTGAGGCTGGGATCATGGTTCAGTCAGACCAGTGTTTGCCTTCAAGCATGAGTGCCTGTGTTGGGATGCTCAGGACCCATGGGCAAAGACATTGCTGGTCTCACACTTCTGCAACCCAGGTCTTGGGTCAGGACACAGTGCTTATTGGCCAGTCAGCCTAGCCACACCAGTGACCTTTAAGTTTAATGAAGGTCCTTATTTCAGAAAATAAGTTGGAAGGCCAAAGAAATAGCTCAGTGGTTAGAAGTAGTAAAAACATAAGCCCAGCCACCCGAATTCAGTTCCTGGATCTTATATAGCAAAACTGGATGCAGTGGCATGAATCTATGTCCCTCCCATGGTGAGATGGGAGGTGGAGACAGGAGAATTACCCGGTAGCTTGTGAACCAGCCTGGATCACAGCACAGCAGAAACAAGAGAGACCCTGCCTTGTCCAGCTGAAAGGAGAGACTGAGCTCCTGAAAGTTACTCTCTGAACACACACACACACGTGCACACACACATGTACACACATGCACACGCACATATACAAACACATATAAATAATAAAGTGAAAGAGAGCGGTTAAAGAAAGGCAAGTGCTGTCAATCTCTGGTCTCCATATGCATATATGCACAAACATGCACACACCCACACTAACCAGTGCATGTACCATACCAGACACAATAGAATAGATATACAAACACCCACACAAAGCAAAAAAAAATCAGTAAATGTCTCTTAAGAAACTAATTGCTTTCCTTTCAGCAAAGTAATAATATTAATATCTAATGGACTAGTCATAGTTCACTTAGGTAGTGCTTAGGTATAAATATATTTTCATATAATTACAATGATCCCATGAAATAGACTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGACTGGAACTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGCGCCACCACACCGGGCACATTTTAGTATAATTATTATTGAAACAGCATCTCTGTATCTCCAGCTGACCTCAAATTCAACTTTTGCATCTTCCTTCCTTAGACTTCCAAGTGCTGGAATTGCAGGCATGATCCACCCTAGCCAGCTATAATAAACAATTTTTTAATGATTTTTTTTTCAATACATGTCTGTGTGTTTTGGTGTGTGCGTGTGACTGCAGTACCTGAGGAAGCCAGAAGAGGGTGGCAGATTCCCCTGGAGTTAGAGGTACAGGCTGATAAGAGTTGTGGGATCTGGGAACTGAACTTAGTCCTCCGCCAGAGCATGTGCTCTTAACCACGGAGCCATCTCTCCAGCCCCGACTGTAGGCACTCTTACCATTGCTATTTTACATATAGAGAAGCTGAAGCGTAGGAGTAGGTTGCCCATTGCCACACTAGAGTTCTTTGGTAACCGTAATGGGAATGTCCCTAAACTGTCTACCTTCTTTAAGGACTTCATCGATTTTCATGCTGACCTATACCTTGTAACACATTTCACTAAAATGAGCCAAAGACAATTTGAATTTTCTCATTACCTCATGTTTCTTTCCTTCTAAGCAG
Seq C2 exon
GATGCTTCATTTCTAAGCCAGATGTGATTTCCTTACTGGAGCAAGGGAAAGAGCCCTGGAAGGTTGTGAGGCAAAGAAAACCATGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058447-Zfp82:NM_177889:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.238
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: