HsaINT0185547 @ hg38
Intron Retention
Gene
ENSG00000181007 | ZFP82
Description
ZFP82 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:28682]
Coordinates
chr19:36405580-36408013:-
Coord C1 exon
chr19:36407887-36408013
Coord A exon
chr19:36405673-36407886
Coord C2 exon
chr19:36405580-36405672
Length
2214 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
ATTCCTTTTCTTCTAAGCAGGAT
3' ss Score
8.07
Exon sequences
Seq C1 exon
CGATCAGTGATGTTCAGTGATGTATCCATAGACTTCTCTCCAGAAGAGTGGGAATACCTGGACTTGGAACAAAAGGACTTGTACAGAGATGTCATGTTGGAGAACTACAGCAACTTGGTCTCACTGG
Seq A exon
GTAAGGTTATCTGCTTCTAGGAATTTAGACTGTGTTCTCTGTAAATCAGCTTTTTCCTGTGGAAATTTCAAGAGTATCTTTTAGGAAGCTATCTAAATTTTTGCTCCACTTTCTAAAGGGAACACTTTGAGCTTTATTTCATTGGAAGTGAGCACCTTCATTAAGCACATTGACCTTCCCCATCCTTAAGTAGCCCTTGGGCCTTAATAATGAAGGGGCTGGGTTTGAGATCTTTGTGATTTGTAGCCTCACCAGCGTCAAAGAAAACAAGTTTCACTTTGTGTTTGAATTCAGAACTGCTTTAGATGTTTTGTTGCTTGTTGGTATATTTTGTAAGGGAAATAGCTAGATCCTGTTTATTGAATTAGCTCTATCAAAATAATACATATGATTTATGTAGTGGTAAAATGGATCAACAGCATGTATTTACAATTCAAGAGAACTCATTCCCTTCATTAATAAACAATCATATTCAGTTTTACCTACCTTTATGATTGAAAATTAAAAATCTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATCGAGACCATCCCGGCTAAAACGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATGGCGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCTGAGATCCCGCCACTGCACTCCAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAGAAAATTAAAAATCTAAGATTTGTATTCATGTGTTTTATTGCACAGCAAGATGAGTATAGTTAATAATAATGTATTGTATATTGTATATTCCAAAATAGCTACAAGAGAGTATTTTTAATGTTCTCACTACAAAGAAAAGAAATGATAAATATTTGAGGTGATGGATATGCTAATTACCCTGATTTGCTAATTCCACAATGACATGTATCAAAACATCACATTGTAGCCTATAAATATATACAATTATTAGTCAAAAGACAAAATAATTATTAGTGAGTATTTGGAAAAACTAGAACCCTCATACATTGCAGTGGGAATGTACGATACTATAGATACGACCCTGTAATTCTTCTCCTAAATGTTTACTCAAGAGAAATAAAAATGTGTCTATACAAAGATGTATAAGTATTCACAGCAGCATTATTCACATTATCTAAATAAATGGATAAATAAAATGTGGCATAGTCATACAATAGAATATTCATTGAAGGAACAAACTACTGATACATGTTATAGCATGCAAGAATATAAAAAACACTATGCTAAGTGGAAGAAGCCAGATGCAAAAGATTACATATTATATGATTCTATTTATATGAAATGCCCAGAAAAGGCAAATCTATAGAGACAAAAAGAAGATCAATGGTTGTCTGGGGCTGGGAGTAGGAATGAGGATTGACTGCCAGTGACCAATAGGGATATTTGGGGGATGACGGAAATATTCTAAGTTTGGGTTATGGTGACGTTTGCACAACTCTGTAAATTTACTAAAAATCATTGAATTGTACACTTAGGTAGGTTTTATGTTATATAAATTATATTGCAGCAAAGCTGTTAAAATCCAAGAACTTTACATTTAATTTAACATTGTTTGAATATCCAAGAAATAATACATGTCCCAGAAAGCTTATTTTTCCTCTCAGCAAAATAACAATAACCAATAGCTAATGAAATATAAATAGTGTTTGGTATATACTCTAGGCAATGTTTAGATACAGACATATATAAATATAATCTTAACAATAATCATATAAGATAAGTACTATGATTATCCCTATTTTATAGGGAAGGAAAAGGTAGCATGGAAGTAACTTGCCCAAGGTCATACAACTAGGATGTGGTTCAGGCAGGATTTGCACCCAGCAGTCTGTCATCTCAACCACTATTGCCTCTGAAAAAGAAACACTTATATGAATATAGATTTTAAAAAGATTTTTTCATTCCCTCTCTAGTCTCTATTTATTGTGTAACCTTAACGTAAATGTTTTTAAAACATCTTTCACTTATTTGTTTTGCCTTATTAATTACTGTTTTGACATATACTTTAACCAAGACTGAATCAAAGTAATTTTGATTTATTTTTTATTTTCATGTACCTTATATTCCTTTTCTTCTAAGCAG
Seq C2 exon
GATGCTTCATTTCTAAACCAGATGTGATTTCCTCATTGGAGCAAGGAAAAGAGCCTTGGAAAGTTGTGAGGAAAGGAAGAAGACAATATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181007:ENST00000392161:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.005
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains