BtaINT0166080 @ bosTau6
Intron Retention
Gene
ENSBTAG00000023464 | ZNF780B
Description
zinc finger protein 780B [Source:HGNC Symbol;Acc:HGNC:33109]
Coordinates
chr18:47286941-47288315:+
Coord C1 exon
chr18:47286941-47287067
Coord A exon
chr18:47287068-47288222
Coord C2 exon
chr18:47288223-47288315
Length
1155 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
3' ss Seq
TTTTTTTTTTTTTTTTTTAGGAT
3' ss Score
13.59
Exon sequences
Seq C1 exon
GAATCAGTGATGTTCAGTGATGTGTCCATCGACTTCTCTCTGGAAGAGTGGGAATTCCTGAATTTGGAACAGAGGGATTTGTATAGAGATGTAATGTTGGAGAACTACAGCAATTTGGTCTCATTGG
Seq A exon
GTAAGCTTATCTGCCTTTAGAAATTTAGTCTCTGTTCTCTGTACTATCAGCTTTCTTCTTTGGAAATTTTAGAAGTACTTTTTAAGAAACTACGTATCTGCTCCCTTTTCTCAAGGGAATGGTTTGAGCTTTTTGTTTGGAAATGAGCACGCTCATTAAGCATATTCATCTTCCCCATCCTTCTGGGAATTTCTATAGTTGTTTAGTCACTAAGTCTCTGTCCGACTCTTTGTGACCCCATGGACTGCAGCCCACCAGGCTCCTCTATCCATGGGATTTCCTAGGCAAGAATACTGGAGTGGGTTGCCATTTCCTTCTGCAGGGAATCTTCCTGCCCCAGAGACTGAACCCATGTCTCCTGCACATCTCCTGCTTGACAGGTAATTCTTTACCACTGAGCCACGTGGGAAGCCCCAAATAGCTAGAACTAGTATCTTAGCTTTTCTCTGGCTATCAGAAGAAGATATAATTTTTTAAACAGTAAGTTGTATCAACTGGATTTATTTATAGTTCAGACTTTTTTCTTTTTGTTAATAAACATATTCGCTTCTACCTACTTGTATGACTGAAAGTTAAAAATCCAAGAACATTGCGTTTAATGTTGTATGGATATCCCAAGGAAAAAAAAAGAGTAAATGCCTCAGGAAGCTTCTTTTTTCTCTTATTAAAATAACAGTGATAAATAATAACTAATAAAATAGATATACCACTTAGTATATATTCTAGGCAATGTGAACATTCATGTAAGATAGGTACTATAATTATCCCTATTTTATAGGTGAGGAAAATAAAGCATAGAAATAACTTGTCCAAGGTCACACTATGGGGATATGGCAGAGGCAAGATTGAACCAGGACAGTCTCTCAACCACTATTGCTTTCAAGAAAAGGAGTACTTGTGTGAATATAAATTAAAATAAGACCTTTTTCTTTCCTCTGTAAGCTCCATTTCTTATGTAATTTTAACATATTTTTTAATCATCTTATTTTTCTTTGTTCTAAAGGCTTTATCAATTACAATTTGACGTATAGTGTATTAAAAATTTAACCAAGACTGAATGAAAGTAATTTTGAATTTATTATTATTCCATGTCACCTTATATTTCTTTCCTTCTGTCCAGGATGTTTCATTTCTTTTTTTTTTTTTTTTTTTTAG
Seq C2 exon
GATGTTTCATTTCTAAACCAGATGTGATTTCCTTATTAGAACAAGGAAAAGAGCCCTGGAAAGTAGTGAGGAAAGGAAGAAGACAATATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023464:ENSBTAT00000053827:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGATGTTCAGTGATGTGTCCA
R:
TGGATATTGTCTTCTTCCTTTCCTCA
Band lengths:
214-1369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development