MmuINT0179223 @ mm10
Intron Retention
Gene
ENSMUSG00000058402 | Zfp420
Description
zinc finger protein 420 [Source:MGI Symbol;Acc:MGI:2444666]
Coordinates
chr7:29872892-29876827:+
Coord C1 exon
chr7:29872892-29872933
Coord A exon
chr7:29872934-29874178
Coord C2 exon
chr7:29874179-29876827
Length
1245 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
GCTTTTCTCTTATCTTCCAGGCT
3' ss Score
10.78
Exon sequences
Seq C1 exon
AAATCAGGGATGTTTAATGATGTTGCTTTTGACTTCTCTAAG
Seq A exon
GTAAGAGTGGAAACACTTCGCCTCTGCTCAGAGGGACTTATACAGAGATTATCTTTGTAAAGTATAGTAACTCAGTGTCAGTTGGGAATTCATTTCTGCTCTTTGTATCTCAATGCCTACATTTTAAAAATATTTATTTTATGTGTATGAGTGTTTTTCCTACACATATGTATGTATGTGTACAGCATGCATGTAGTGCCTGTGGAGCCCAGAGGGGCATCAGATCCCCTGGAGCTGGAGTTACAGAGGGTTGTGAACCACCATGTGGGTGCAAGAGCAGCCAATGCTATTAACCTCTGAACTCTCTCTCTTTAAATTTCTATGTTTTAAGTTATTCAAAAGCATCAGTTGAGCTTAGTGTCTATCTTAGCACTCCAGAGGTTGAAGCAGGAGGATTGCAAGCTCCACACCAGCCTGGACTACATAAGATGAGAGAAAGAAAATGGAGAGGCTGCCTGCTGGGTTTAGACCCGCACTGGCCAGTCTCTTGTTCCTACACTGTAGCCCTCAGCATCTCATCACTCTCATTTAAAAGCTATCAAAAATTTAAGCAGGGATAGCAAATCACAATCTAATCAGGTAATAAAAATATCAAAACTGTGACCTCCACTATATTCATTTTCTGATTTGTTAGAGTCTGAGTTAGTTATTCTGGTGTATGTTTGGACATCTTTAATTTTAACAACTATATGACATGATATTTATTCCCCACTAGAGTTTGACAATCACTGGGCTTTTTTAAATCACTATTAGAAATTATTAGGAAGAGATTTGTAATAGATATAAGCATGGGGGTTAACAGAGAAATGCTCAGGGAGTGGATGGTTCACACCCAAGAGATGGTATATTTCTCTGGAGAACAACACCAAGAACCATTAATTTTGGAATTGTTGTCGTCATTGTTGCAAATAGCACCATGACTGAAGCCCAAGCTGTTTTGTATTGTTTTGTTTTAATTTTGGACAGCAGCATCAAAATTACTTTAGTTGGTTTTTTTGTTTGTTTTGTTTTTTACTTTTTTTTACTATGGGAGATTATAGAATAACATAGAATGGAAAACAGTATTATTTTAATGAAACTATGTAGTAAATTTTGCTGTAAAATGTACAAATGGGACATAGTAAGCAATCGTTAGAAAACATTAATATATACTTGTTATTTCTTATAGATATTATTTCCTTCTTGTCTTTTCTGACATATTATTTCTATTTCTCTGAAGTTTCTTGCTTTTCTCTTATCTTCCAG
Seq C2 exon
GCTTGCCCTCTGAACAAGGACTTGTCTTCAAAATAGCACACCAAGGGATCAGAATTGTGTCAGTGGGAAATGAGTGAGACATTCGAAAACTGTATACCTAAGACTAATTCTAGAAAATATTTGGAAGTCAGAGTTAGAGAGGGAACGAGAAAATCCGAAGGAATATTACAAGCAAGAGATGGTAACACATGACACAATGTCCGTTTTCTGCCCAGGCACGCGCCTACCTCAGCATCCACGGGGTTACTCTACAGAGAAGCCCTATAAATGTGAGGAGTGTGGCAAAGCCTTCAGGCGAGCCTCACACCTGTCCCAGCATCAGAGTATTCACACTGGTGAGAAACCCTATGAATGTAAGCAGTGTGGGAAGGCCTTTAGTCGTGATTCCCAGCTAAGTCTTCATCAGAGACTTCACACCGGTGAGAAACCCTACACATGCAAGGAATGTGGAAAGGCTTTCACTCAAAGCTCACAACTTATTTTGCACCATAGAATTCATACGGGTGAGAAACCATACAAGTGTGAAGCCTGTGGGAAGGCCTTTATTCGAAGCTCACAACTCAGCCGCCATCAAAAGGTCCACACTGGAGAGAAACCCTTTGAATGTAAAGAGTGTGGGAAGGCCTTCACCCAGAACTCACAACTTACTCTGCACCAGAGACTGCACACTGGTGAGAAGCTCTACGACTGTAAGGAGTGTAGGAAGGTCTTTACTCAGCTCTCGCAGCTTATTCTCCATAGAAGAATCCACACTGGCGAGAAACCCTATGAATGCAATGAGTGTGGGAAAGCTTTCATTTGTGGCTCACAGCTCTCGCAGCACCGGAAAATCCACAATGGAGAAAAGCCATATGAATGTAAGGAGTGTGGGAAGGCTTTTATTCGAGGCTCACTACTTATGCAACATCAAAGGATTCACACTGGTGAAAAACCCTATAAATGTGACGAGTGTGGAAAGGCTTTTATCCGTGGTTCCCAACTCACTCAACATCAGAGGGTTCATACTAACGAAAAGCCTTACGAATGTAAAGAATGTGGAAAGACCTTCAGTCATGGCTCACAACTAACTCAACATCAGAGAATCCATACTGGTGAGAAGCCCTATCAATGTAAGGAGTGTGGGAAAGCCTTTAATCGCGGGTCACTCCTTACTCGACATCAGAGGATTCACACCGGTGAAAAACCCTACAAATGTAAAGAATGTGGAAAAAATTTTAGCCGGGGCTCAGAACTTACTCAGCATGAGAGAATCCACACGGGTGAGAAGCCCTATGAGTGTAAGGAATGTGGGAAGTCCTTTATCCGTGGCTCCCAGCTCACTCAGCATCAAAGAATCCACACAGGTGAAAAACCGTATGAGTGTAAAGAATGCCGAATGGCCTTTACCCAGAGTTCACATCTTTCCCAGCATCAGAGACTTCATACCGGTGAGAAACCCTACGTGTGTAGCGAATGTGGGAAGGCCTTTGCACGTGGATTGTTGCTCATACAGCATCAGAGAATTCATACTGGCGAGAAGCCGTATCAGTGTAGGGAATGTGGGAAGGCTTTTATCCGCAGTTCACAGCTCACTCAACATCAGCGAACTCACACTGGAGAGAAACCTTATGAATGTAGGGAATGTGGGAAGGCCTTTGGTCATGGCTCTCAACTTACTCTGCATCAGAGGGTCCACACAGGTGAGAAGCCCTATGAATGTAAGGAGTGTAGAAAGGCCTTCACTCAGAGTTCACATCTTTCTCGGCACCAACGAGTTCATACTGGCGAGAAACCGTATCAGTGTAAAGAATGTGAAAAGGCCTTTACACGTGAGTCTCAACTAATGCGACATCAGAGAATTCATATCCGTGGCAAATCTTTGGACTGTAAGGAATGCCGAATAGACTTTAATCATCATTCGCAAATTTTTATATGAGTTAATTTATACTCTGCTAATTAATGTAGCTTTCCCTGGTCATACATTATCAGTGAAGAGTTCTTACAAATGTGAATATGGGACTGTGAATTCAGCATTTGAGAATTTATGTAGGAGAATAGAAATGCTGATGTAATCCACATAGGAAAACCATGTGTTTACTTGTTTACATTGTATTACATTTTAGCAAATTAAAGTAGGGAAGTGAATCCGTTGCTGTGATATAGAAGGTCTTTAGCAGAGAAAATTTCTCTATCACATTACACAGGTCCTATCAGTTGGTTTCCTTTGTTACATTTGTTATGACTAACCTGGCTTTCATGTAATCATTTGTAATATAGATCTAAGATTCTTCTAAAGATCATGTTTTAACATGTAAAAGCACTTGGATCAGCTCCTTTCATATCATAAATATTAGCTGCTATTTTCATTATTTGCATGAAAGGAGGGAACGGATAAGCATTATCATTAAGAAATCTTTCGTTATTATTTGGGAGGCTTTATATACTATCATCAGTGTGAGAAAGCTTTCATTCAGATCTTATTTATTATAGAAGGGAATTTATACTAAAAAGAAGCCTTGGTATCAGTGGGTTATTGAATACTATGGTTACAGAACTGATTTGTCACAGAGTCCCAAAACTTACATGTTTCACTATCTCTAACTTCAACTCAAGAATATTACTTATACATGATAACTAAGCACTCAAGATAAACCTAGGAAATGAAAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058402:ENSMUST00000057652:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGGATGTTTAATGATGTTGCT
R:
TGGGACAGGTGTGAGGCTC
Band lengths:
354-1599
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types