MmuINT0179223 @ mm9
Intron Retention
Gene
ENSMUSG00000058402 | Zfp420
Description
zinc finger protein 420 [Source:MGI Symbol;Acc:MGI:2444666]
Coordinates
chr7:30657911-30662321:+
Coord C1 exon
chr7:30657911-30657952
Coord A exon
chr7:30657953-30659197
Coord C2 exon
chr7:30659198-30662321
Length
1245 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
GCTTTTCTCTTATCTTCCAGGCT
3' ss Score
10.78
Exon sequences
Seq C1 exon
AAATCAGGGATGTTTAATGATGTTGCTTTTGACTTCTCTAAG
Seq A exon
GTAAGAGTGGAAACACTTCGCCTCTGCTCAGAGGGACTTATACAGAGATTATCTTTGTAAAGTATAGTAACTCAGTGTCAGTTGGGAATTCATTTCTGCTCTTTGTATCTCAATGCCTACATTTTAAAAATATTTATTTTATGTGTATGAGTGTTTTTCCTACACATATGTATGTATGTGTACAGCATGCATGTAGTGCCTGTGGAGCCCAGAGGGGCATCAGATCCCCTGGAGCTGGAGTTACAGAGGGTTGTGAACCACCATGTGGGTGCAAGAGCAGCCAATGCTATTAACCTCTGAACTCTCTCTCTTTAAATTTCTATGTTTTAAGTTATTCAAAAGCATCAGTTGAGCTTAGTGTCTATCTTAGCACTCCAGAGGTTGAAGCAGGAGGATTGCAAGCTCCACACCAGCCTGGACTACATAAGATGAGAGAAAGAAAATGGAGAGGCTGCCTGCTGGGTTTAGACCCGCACTGGCCAGTCTCTTGTTCCTACACTGTAGCCCTCAGCATCTCATCACTCTCATTTAAAAGCTATCAAAAATTTAAGCAGGGATAGCAAATCACAATCTAATCAGGTAATAAAAATATCAAAACTGTGACCTCCACTATATTCATTTTCTGATTTGTTAGAGTCTGAGTTAGTTATTCTGGTGTATGTTTGGACATCTTTAATTTTAACAACTATATGACATGATATTTATTCCCCACTAGAGTTTGACAATCACTGGGCTTTTTTAAATCACTATTAGAAATTATTAGGAAGAGATTTGTAATAGATATAAGCATGGGGGTTAACAGAGAAATGCTCAGGGAGTGGATGGTTCACACCCAAGAGATGGTATATTTCTCTGGAGAACAACACCAAGAACCATTAATTTTGGAATTGTTGTCGTCATTGTTGCAAATAGCACCATGACTGAAGCCCAAGCTGTTTTGTATTGTTTTGTTTTAATTTTGGACAGCAGCATCAAAATTACTTTAGTTGGTTTTTTTGTTTGTTTTGTTTTTTACTTTTTTTTACTATGGGAGATTATAGAATAACATAGAATGGAAAACAGTATTATTTTAATGAAACTATGTAGTAAATTTTGCTGTAAAATGTACAAATGGGACATAGTAAGCAATCGTTAGAAAACATTAATATATACTTGTTATTTCTTATAGATATTATTTCCTTCTTGTCTTTTCTGACATATTATTTCTATTTCTCTGAAGTTTCTTGCTTTTCTCTTATCTTCCAG
Seq C2 exon
GCTTGCCCTCTGAACAAGGACTTGTCTTCAAAATAGCACACCAAGGGATCAGAATTGTGTCAGTGGGAAATGAGTGAGACATTCGAAAACTGTATACCTAAGACTAATTCTAGAAAATATTTGGAAGTCAGAGTTAGAGAGGGAACGAGAAAATCCGAAGGAATATTACAAGCAAGAGATGGTAACACATGACACAATGTCCGTTTTCTGCCCAGGCACGCGCCTACCTCAGCATCCACGGGGTTACTCTACAGAGAAGCCCTATAAATGTGAGGAGTGTGGCAAAGCCTTCAGGCGAGCCTCACACCTGTCCCAGCATCAGAGTATTCACACTGGTGAGAAACCCTATGAATGTAAGCAGTGTGGGAAGGCCTTTAGTCGTGATTCCCAGCTAAGTCTTCATCAGAGACTTCACACCGGTGAGAAACCCTACACATGCAAGGAATGTGGAAAGGCTTTCACTCAAAGCTCACAACTTATTTTGCACCATAGAATTCATACGGGTGAGAAACCATACAAGTGTGAAGCCTGTGGGAAGGCCTTTATTCGAAGCTCACAACTCAGCCGCCATCAAAAGGTCCACACTGGAGAGAAACCCTTTGAATGTAAAGAGTGTGGGAAGGCCTTCACCCAGAACTCACAACTTACTCTGCACCAGAGACTGCACACTGGTGAGAAGCTCTACGACTGTAAGGAGTGTAGGAAGGTCTTTACTCAGCTCTCGCAGCTTATTCTCCATAGAAGAATCCACACTGGCGAGAAACCCTATGAATGCAATGAGTGTGGGAAAGCTTTCATTTGTGGCTCACAGCTCTCGCAGCACCGGAAAATCCACAATGGAGAAAAGCCATATGAATGTAAGGAGTGTGGGAAGGCTTTTATTCGAGGCTCACTACTTATGCAACATCAAAGGATTCACACTGGTGAAAAACCCTATAAATGTGACGAGTGTGGAAAGGCTTTTATCCGTGGTTCCCAACTCACTCAACATCAGAGGGTTCATACTAACGAAAAGCCTTACGAATGTAAAGAATGTGGAAAGACCTTCAGTCATGGCTCACAACTAACTCAACATCAGAGAATCCATACTGGTGAGAAGCCCTATCAATGTAAGGAGTGTGGGAAAGCCTTTAATCGCGGGTCACTCCTTACTCGACATCAGAGGATTCACACCGGTGAAAAACCCTACAAATGTAAAGAATGTGGAAAAAATTTTAGCCGGGGCTCAGAACTTACTCAGCATGAGAGAATCCACACGGGTGAGAAGCCCTATGAGTGTAAGGAATGTGGGAAGTCCTTTATCCGTGGCTCCCAGCTCACTCAGCATCAAAGAATCCACACAGGTGAAAAACCGTATGAGTGTAAAGAATGCCGAATGGCCTTTACCCAGAGTTCACATCTTTCCCAGCATCAGAGACTTCATACCGGTGAGAAACCCTACGTGTGTAGCGAATGTGGGAAGGCCTTTGCACGTGGATTGTTGCTCATACAGCATCAGAGAATTCATACTGGCGAGAAGCCGTATCAGTGTAGGGAATGTGGGAAGGCTTTTATCCGCAGTTCACAGCTCACTCAACATCAGCGAACTCACACTGGAGAGAAACCTTATGAATGTAGGGAATGTGGGAAGGCCTTTGGTCATGGCTCTCAACTTACTCTGCATCAGAGGGTCCACACAGGTGAGAAGCCCTATGAATGTAAGGAGTGTAGAAAGGCCTTCACTCAGAGTTCACATCTTTCTCGGCACCAACGAGTTCATACTGGCGAGAAACCGTATCAGTGTAAAGAATGTGAAAAGGCCTTTACACGTGAGTCTCAACTAATGCGACATCAGAGAATTCATATCCGTGGCAAATCTTTGGACTGTAAGGAATGCCGAATAGACTTTAATCATCATTCGCAAATTTTTATATGAGTTAATTTATACTCTGCTAATTAATGTAGCTTTCCCTGGTCATACATTATCAGTGAAGAGTTCTTACAAATGTGAATATGGGACTGTGAATTCAGCATTTGAGAATTTATGTAGGAGAATAGAAATGCTGATGTAATCCACATAGGAAAACCATGTGTTTACTTGTTTACATTGTATTACATTTTAGCAAATTAAAGTAGGGAAGTGAATCCGTTGCTGTGATATAGAAGGTCTTTAGCAGAGAAAATTTCTCTATCACATTACACAGGTCCTATCAGTTGGTTTCCTTTGTTACATTTGTTATGACTAACCTGGCTTTCATGTAATCATTTGTAATATAGATCTAAGATTCTTCTAAAGATCATGTTTTAACATGTAAAAGCACTTGGATCAGCTCCTTTCATATCATAAATATTAGCTGCTATTTTCATTATTTGCATGAAAGGAGGGAACGGATAAGCATTATCATTAAGAAATCTTTCGTTATTATTTGGGAGGCTTTATATACTATCATCAGTGTGAGAAAGCTTTCATTCAGATCTTATTTATTATAGAAGGGAATTTATACTAAAAAGAAGCCTTGGTATCAGTGGGTTATTGAATACTATGGTTACAGAACTGATTTGTCACAGAGTCCCAAAACTTACATGTTTCACTATCTCTAACTTCAACTCAAGAATATTACTTATACATGATAACTAAGCACTCAAGATAAACCTAGGAAATGAAAAAGACTTGAATGTGTAGTTTTGTGAACTAATCTGAAAGTACAAAATAGACAACTTAGAATAAAAAACAACACATGATCTTGTATCAGAGATCGGTGTTCGACCCAGTTTTCATCTCTTTTTCATCATAAAACCTAGGCAAGACAAAAACCTCCCATACACAAAAATTTAGTCTCCATTGCAGATCAACAAGACGAAAATGGTGTCTGTATGACTAGAACACTTTAAAAAATCCATCCTCTCTGCTTCTTTCCCTTCTTAACACTGTAGACAGTGAGGCAGAGCACAGACGGCCTCGTGAGGGGTTGGGAGTGGTCTCTGGGTGTTACTGATGGCTGAGTCTGCAAGCCTGTTGATTTGTAAACAGTCATGGTAACTCTGCTTTGCCTCTGTGCTTTACTTAAAAGTAAAGTAGCCCTCAGACTGGTTGATGCTCTCCGAGATCACTGAATAATAAAACTTCCCTTAAGGACAAGAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058402-Zfp420:NM_172740:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=3.8),PF079757=C1_4=WD(100=9.2),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF097235=Zn-ribbon_8=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.3),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5),PF134651=zf-H2C2_2=WD(100=4.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGGATGTTTAATGATGTTGCT
R:
TGGGACAGGTGTGAGGCTC
Band lengths:
354-1599
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: