RnoINT0168400 @ rn6
Intron Retention
Gene
ENSRNOG00000048138 | Zfp566
Description
zinc finger protein 566 [Source:RGD Symbol;Acc:1563239]
Coordinates
chr1:88415257-88420545:-
Coord C1 exon
chr1:88420419-88420545
Coord A exon
chr1:88416587-88420418
Coord C2 exon
chr1:88415257-88416586
Length
3832 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
GATCTCTTTTCTTTATTTAGTCC
3' ss Score
7.36
Exon sequences
Seq C1 exon
GTGTCAGTACTGTTCCATGATGTGTACATAGACTTCTCTCAGGAGGAGTGGGAGTGCCTGACTGAGGAGCAGAGAGATTTATACAGAGATGTGATGTTGGAGAATTACAGCAACCTGCTTTCAATGG
Seq A exon
GTAAGGACGTCCATCCACACTCCCTCGCATTTGCCCTTTGCTGGGTTGTTTCCTCAAGGGTTCTCAGGATGCTTGCCTGCTTTTGAAAAAGCCGTCAGGCCTCTGCAGCCTAGTCCCACAGAGTGTGTCAAGTATTGCAGAGTGGCGACGGGAACCTATGTGTGGGGGCTCGTGCCTGTAACTGCAGCACTTGGGCCGCTGAGACCGGACTGCGGCTCATTCCAGGCCAGCCTAGGCTACATGGGACCCACCTCAAAAAGTAAAAATAGAAAAGAAAAGAAGAGCCAAAAATAGGTGAGCGTGTTGGCACACACTGGTAGTGCCAGCGCTTGGGAGGAGGAGGCAGAAGTCTGTAAGTTCTAGGCCAGCCAGGGCTACAGTAGATCCTGTCTTAAAACCTGAAAGGGAAAGAGAGGGAAAGCTGCGTGGAGTTACAGAGGCATGGAGTTACAGTTCCCTGTCTCCTGAAGTGTCCTTTACTCCTCTGTCACCCTTCTGCAATGCATACTTTGGATCCAGTTCCTTCCAAGCTTCTTGAAAGGCCTGCAGGTCTGGGGGACACTTGGGTGGTTGTGGGTGTAAGAAGTTTATTAGCAGAGTTATTAACACACGCACAGACGCACACCAGCATGGCTGAGACCGAGGACACCTCAGACCCCAGCATCACGGCACAGTGTGAGCTCTAAGAGCAACAGAGTCTGCTTCCAGCTCTGAAGCCGGGGCCTGTGATTGCCCATCAGGCAGTCGGGGAAGAGAAGTGTGGACTCTCTAGGTCCTTTGGTGTGCTCAAGCCTCCAACCTCACATCTGATGAGAAACCCAAGGACCTGGGATGCTGTTGGGATGCTCTCCACAGGGTGCCTGTGAGTGCCTGTGAGGCCAGGGAGAGGGGCCTGCAGGGGCTGCGGCCTGAGCAGCAGCGCGGTCTGGACTCCAGTACTTCTTAGCAACCTCTTATCTGTCCGCTGTCCGCTGTCCGCTGTCCGCTGGAATGTGTATTTTCATACATTGTCAAAGATACACCCCGCTCTCCATCTCCCCCTTTTCCTTCTCTATTTATGCTGCTCCTTCACTCTGTCTGGGGATCAGCCAGGGCCTGTGCCTGCTAAGCGAGCCTTGTACCACCGACCTGCCATTCTGTCGACTTGCTTTCTTACCTAGGTTTTCATCTGTCTGTTTTATTTGGGAGGTCCATACCGTCCTTGATTCATCCATACTTCTTTCTAACTACTGTTCGCTGTTTCTCTAATGAGTGCAGTTCTCGGCACAGAACCACAGAAGTGAAGATAGCATTGTAGCCGTGTCCGATTCACTGCCTGTTCTACCACAGAAGCACTGGCCCAGAGGCTGCCATAGAAACTGTCATCCGTGGGCCCCGTTTCCTGTGCTTGGTCAGGCTCTACTCACAGACATCAGCCTCTAGACCTCAGGTCTGCGATGGGTGAGGGACTGACGTTCACAGCTCATCCCTGAGGTCTGCCCTACCTCCCACAATAGTAATGTTCAGCTCTAGGCCTTATGTGTATGTGTGTACTTAAACATACATGTGGGGCTGGGGATTTGGCTCAGTGGTAGAGCGCTTGCCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAGGAAATTAAAAAAACAAAAAACAAAAAACATACATGTAATTTAAGGTAAATATAAAATAATGTGATCCTATAGCTTTTAAAAGTGAACTTATGGTGATTATCACTCCTTTCTCTCCTGTATTAACCATCTTCCTCAGTGTAAAATTACAGATAGCCCAGTACCCAGCCGTCCCTCTCTCCAGGGCTCCTACTGGAATGGCGTCTTTTCTCTCTCCTGGTTCCTGTGCTTGCTCCAGATTGTATGGTCACACCTGAGGATTTGGCGCCAGGAATGACACGAGACAGAACTTTTGTCTTTCTGGGTCTGGGTTACTTCACTTACACACATGGATGCACACATGCATGTATTCCTACTTTTTGAGGTAGGATCTCTCTGTGGAGCTCTGCCTGTCTGTAACTCTTCTCTGTAGACCAGTAGCCTAAAGTTCATGGAGTATGTGTGTGGCCTGCATGTGTGTGTCGTGTGGATGCAGTGCCCATGGAGGCCAGAAGAGGGCATCAGACCCCTAGGTGGAGTTACTGCCTAGCATTAAGACTTATTCCACAGTGGCATTGAGTATCTCCTACATACCGTGTAGTTCACAGAGGCACTCCTATGGCCTCACCCTGTTGTCTCTTAGTTCCTCATTATCTTGTTTTGTTTTATTGAGATGGTGTTTCTTGTAACCCAGACCTGCCTAGAACTCACAGTGTAGCGCAGGCTGACTTGAACTCAGAGCAGCTTTCTCCTTAGCCTCAGGAGTTCTGAGAGTACAGATGTGAGCCACCTCACCAGGGATTTCTCATCCACACTATTTTTTTTTTAATTTATTTATTCTTTTATGTTATGGGTACACTTGCTGTCTTCAGACACACCAGAAGAGGGCATTGGATCCCATTAAAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCGCTGAACCATCGCTCCGGCCCCTCATCTGCACGATTTATTGACTTAAACACACACACACACACACACACACACACACACACACACACACACACACACACACTTTTTCCCCAAGCTGGGCAGTAGTGGCACATGCCTTTAATTCCAGCACTAGAGAGGCAGGGGAAGGTGGATCTCTGTGAGTTCAAGGCCAGCCTGATCTAGAGTGCATTCCAGGACAGCCAGGGCCACATAAAGAAACCCTGTCTCAAAACAAAACAAACAAAAAAAAGTAGTATTTATTTGTATGACTATTTCGCGCCACGTATGTGTGTATATGTGCACCCTGTGCATGCCTGGTACCTGCAGAGGTCAGAAGAGGGCATTGGATCTCCTGGGACTGCAGTTATAGTCAGCTGTGAGCTACCATGTATGTACGGAATGGAACCTGGGTCTTCTGCAAGACCTAGTGCTCTTAACTGCTGAGCCTACTCTGACCCCTTATTGACTGATATTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCCCTCCTTCCCTCCCTCCCCCCCACCTCCTTCCTTCCTTCCTTCCTTAAAAATTTTTTCTGGGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAAAAAACAAAAAAAAAAAATTTTTTTTTTTCTGAACAGTTTTCTCTATGAAACCGTTTTGGAGACCAGGCTGGCCTTGAACTCACAGAGATCTGCCTCTGCCTCTCCTGAATGCTGGGATTAAAAGTGTGTGCTACCAAACTTGGCTGTATTTCTTTTTCCTTTAGTGATTTATTTTTATGTGTACTGGTGTTTGGCCTGCATGTATGTCTGTGGGAGGTGCCAGATCCTCTAGAATTGGGGTTAGATACAGTTGTGAGCTGCCATGTGGGAGTTGGGAGTTGAACCTGGGACTTCTGGAAGAGCAGCCAGTGCTCTTAACTGCTGAGTCATCTTTCCAACCTTGAATTTTTTTTTTTTTTCTTCTTAATACAGAGGCTCATAAAACCCAGACTGGCTTCAAACTTAGGGTGACTTTAGACTCTCAGTCCTCCTGCCTTTGTGTCCTGAGTGCTGAGGGTACAGATATTTGCCACTGTGCCTTGCTGACCTTCACCTAGCTTTCAAAAGTCACTTTAGATTGCCCATGTTTATAACACGTCTCGCAAACTATATCAATGGGATTGATCTCTTTTCTTTATTTAG
Seq C2 exon
TCCTGGAGTCAAGATGTGAGGCCCAGAAACTCTTCCTGAAGAAGGAGCTGTGTGAGATAGAAATGGCGCAGTGGGAGATAATGAGGAAGCTCACCAGACAGAACCTTCAGTGCTCCAGTCTCAGCGGTGCCCGGGAATGGAACGGCCACTGCGAGAGACTGCGCGGATCTCAGGAGAGACAGTTCAGCGAACTGATCATCAACCGTGAAGACGTGCCCACTCTCAGTCATTATCCATCCCTCAGGCTGCAGCAGACTGTTAGGAGTAAAGAGAAATACTGTGCAAGTAAAGAAAATAGGCAACACTGTAAGCACGCCTCCCTGTTTTCTCCCCATCAGATCATTCGCACCACTGAGAAGCCGTACGAGTGTAAGGACTGTGGCAAGACCTTTAGGCACCCCTCGGGGCTCACCCACCATCACAAAATCCACACCGGAAAGAAACCGTTTGAGTGTAAGGAGTGTGGGAAGACGTTCATTTGCGGCTCAGACTTGACACGACATCACAGGATTCACACAGGTGAGAAGCCCTACGAGTGTAAGGACTGCGGAAAAGCCTTTAGTAGCGGCTCAAATTTCACTCGTCATCAGAGAATTCACACTGGTGAGAAGCCTTATGAGTGTAAAGAGTGTGGGAAGGCTTTTAGCAGTGGTTCCAATTTCACTCAACACCAGAGGATTCACACTGGAGAGAAACCCTATGAATGTAAGGAATGCGGCAATGCCTTCAGTCAGAGTTCACAGCTTATTAAACATCAAAGAATCCACACCGGCGAGAAGCCCTATGAGTGCAAGGAGTGTGAGAAGGCTTTCCGGTCTGGTTCTGACCTCACTAGACACCAGAGGATCCATACTGGAGAGAAACCGTATGAGTGTAAGATTTGTGGGAAAGCCTATTCTCAGAGCTCACAGCTCATCAGTCATCACAGAATTCACGCTGGTAAGAAAGCCTACGAGGATGAGGACTGTGGGAAGAGCTTTAAGTACGACTCACAGCCTGTTCAGCACCAGAACTTGTATTGGTGATAAACCAAAACATATACAATGTACGGAAGGCTATCCAAGAATCTGTAGACCTCTAGACCGAAGAATGTAGAGACAGTTTACTTGTTGACTGTAGCTTGTTCATCTGAAGAAAACTTTGGAGAAGCAGCCTATGAATGTAGTGTATTTTGGAAGCTATTTAATAACAGTTTATATTTCTTTTGACTCAGATTATTCAGTCTGGCAAATAATTCATAAGAAAAGAGTGCTTTGGGGTTGGGGATTTAGCTCAGCGGTAGAGCGCTTGCCTAGGAAGCGCAAGGCCCTGGGTTTGGTCCCCAGCTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048138:ENSRNOT00000074582:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.122 A=NA C2=0.067
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=7.6),PF097235=Zn-ribbon_8=WD(100=12.0),PF134651=zf-H2C2_2=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=7.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]