RnoEX0101521 @ rn6
Exon Skipping
Gene
ENSRNOG00000048138 | Zfp566
Description
zinc finger protein 566 [Source:RGD Symbol;Acc:1563239]
Coordinates
chr1:88415257-88425515:-
Coord C1 exon
chr1:88425456-88425515
Coord A exon
chr1:88420419-88420545
Coord C2 exon
chr1:88415257-88416586
Length
127 bp
Sequences
Splice sites
3' ss Seq
ATGTGTGGGTGTTGTTCCAGGTG
3' ss Score
8.75
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
TTCCACCCTGTTCCAGAGGAGCAGCACAGAGGACCTGCCACTATCAAGGTCATGGCTCAG
Seq A exon
GTGTCAGTACTGTTCCATGATGTGTACATAGACTTCTCTCAGGAGGAGTGGGAGTGCCTGACTGAGGAGCAGAGAGATTTATACAGAGATGTGATGTTGGAGAATTACAGCAACCTGCTTTCAATGG
Seq C2 exon
TCCTGGAGTCAAGATGTGAGGCCCAGAAACTCTTCCTGAAGAAGGAGCTGTGTGAGATAGAAATGGCGCAGTGGGAGATAATGAGGAAGCTCACCAGACAGAACCTTCAGTGCTCCAGTCTCAGCGGTGCCCGGGAATGGAACGGCCACTGCGAGAGACTGCGCGGATCTCAGGAGAGACAGTTCAGCGAACTGATCATCAACCGTGAAGACGTGCCCACTCTCAGTCATTATCCATCCCTCAGGCTGCAGCAGACTGTTAGGAGTAAAGAGAAATACTGTGCAAGTAAAGAAAATAGGCAACACTGTAAGCACGCCTCCCTGTTTTCTCCCCATCAGATCATTCGCACCACTGAGAAGCCGTACGAGTGTAAGGACTGTGGCAAGACCTTTAGGCACCCCTCGGGGCTCACCCACCATCACAAAATCCACACCGGAAAGAAACCGTTTGAGTGTAAGGAGTGTGGGAAGACGTTCATTTGCGGCTCAGACTTGACACGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048138_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.122 C2=0.067
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=7.6),PF097235=Zn-ribbon_8=WD(100=12.0),PF134651=zf-H2C2_2=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=7.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCACCCTGTTCCAGAGGAG
R:
TCGCTGAACTGTCTCTCCTGA
Band lengths:
250-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]