MmuEX0053456 @ mm10
Exon Skipping
Gene
ENSMUSG00000078768 | Zfp566
Description
zinc finger protein 566 [Source:MGI Symbol;Acc:MGI:1919806]
Coordinates
chr7:30077337-30087159:-
Coord C1 exon
chr7:30087100-30087159
Coord A exon
chr7:30081091-30081217
Coord C2 exon
chr7:30077337-30078618
Length
127 bp
Sequences
Splice sites
3' ss Seq
ATATGTGGGTATTGTTCCAGGTG
3' ss Score
7.22
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
TTCTCCCCCGTTCCAGAAGAGCAGCACAGAGGACCTGTCACCATCAAAGCCATGGCTCAG
Seq A exon
GTGTCAGTGCTGTTCCACGATGTGTACATAGACTTCTCTCAGGAGGAGTGGGAGTGCCTGACTGAGGAGCAGAGAGATCTGTACAGAGATGTGATGTTGGAGAATTACAGCAACCTGCTCTCAATGG
Seq C2 exon
TCCTGGAGTCAAGATGTGAGGCCCAGAAGTTATTCCTGAAGAAGGAGCTGTATGAGATAGAGACAGCGCAGTGGGAGATAATGAGGAAGCTCACGAGACAGGACCTTCAGTGCTCCAGTCTCAGCAGTGCCCGGGAATGGCATGGCCACCGTGAGAGACAGCGCGGATCTCAGGAGAGACAGTTCAGCGAACTGATCATCAACCGTGACGACGTGCCCACTCTCAGTCAGTGCCCATCCTTCAGGCTGCAGCAGATTATCAAGAATAAAGAGAAATATTGTGCAAGTAAAGAAAACAGGGAACACTATAAGCATGGCTCCCGGTTTGCTACCCATCAGATCGTTCGCACCACTGAGAAGCCGTATGAGTGTAAGGACTGTGGCAAGACCTTTAGACACCCCTCAGGGCTCACTCACCATCACAAAATTCACACCGGAAAGAAACCCTTTGAGTGTAAGGAATGTGGGAAAACATTCATTTGTGGCTCAGACCTGACACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078768-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.155
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=7.6),PF097235=Zn-ribbon_8=WD(100=12.0),PF134651=zf-H2C2_2=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=7.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTCCCCCGTTCCAGAAGAG
R:
TCGCTGAACTGTCTCTCCTGA
Band lengths:
250-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types