MmuINT0179467 @ mm9
Intron Retention
Gene
ENSMUSG00000078768 | Zfp566
Description
zinc finger protein 566 [Source:MGI Symbol;Acc:MGI:1919806]
Coordinates
chr7:30862356-30866236:-
Coord C1 exon
chr7:30866110-30866236
Coord A exon
chr7:30863638-30866109
Coord C2 exon
chr7:30862356-30863637
Length
2472 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
CACCCCACCCCCGCCCCCAGTCC
3' ss Score
6.83
Exon sequences
Seq C1 exon
GTGTCAGTGCTGTTCCACGATGTGTACATAGACTTCTCTCAGGAGGAGTGGGAGTGCCTGACTGAGGAGCAGAGAGATCTGTACAGAGATGTGATGTTGGAGAATTACAGCAACCTGCTCTCAATGG
Seq A exon
GTAAGGATGTCTGTCCACACTACCTCTGATTTGCCCTTTGGTGGGGCTGTTTCCTCCTTTCCTCCGAGTGTCCTCAGGATGCTTACCTGTTTTTGAAAAAGCCTTCGGACGTCTACCTCCTAGTCCCAGAGTGTTTCAGGTATGGTAGAGTTAACAACGGGAAGCTGTTCAGTGTGGTGGCTCATGCCTGTAATTACAGCACTTGGGTGGCCGGGACAGGATTGCAGCTAGTTCCAGGCCAGCCTAGGCTACATGAGACCCTGTCTCAAAAAGTAAAAATAGAAAAGTAAAGAAGAGCCAAAAATAGTTGAGCATGTTGGCACACACTGGTAGTCCCAGTGCTTGGGAGGAAGGGGCAGATAGAGCTCTGTAAGTTTTAGGCCAGCCAGGGCTATAGTGGGATCCTGTCTTTAAAAACCTGAAAGGGATTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCTAGGACTACACAGAGAAACCCTGTCTCGAAAAAACCTTAAAAAAACAAAAACAAAAACAAAAAATCCTGAAAGGGAAAAAAAGAGAAAGCTGCGTGGAGTTACAAAAGGCCTTCTGGATCTTCTTCACTTTTCTGTCACCTTTCCTGTAATGCATGCTTTGGATCCAGTTCCTTCCAAGGTTCTTGAAAGATCTTAGATGCAGGTCTGGATGGATTGTTGGGTGTAAGAAGTTTATTAGAAGAGCTATTAACACATGCACAGACAGACACCAGCATGGCTGAGACTAAGGAGACGCCAGGCCCCAGCATCACGGACAGCACCGTGTGAGCTCTAAGGAGTGACAGAGTCTGGTTCCAGCTTACAGATCTCTGAGGAAGGGGGAAGAGTCAGCAAGAGCCTGAAGACGGGGCCTCTGGTTTCTCACCAGGCAGTCAGGGAAGAGAAGTGTGGCTCCCTGTAGATCCTTTGGTGTGTTTGAGCCCCCAAACTCACATCTCCAGATGAGAAACCCAAGGGCCATTCCAAGGGAATGCTGCTGGCTTTCCATAGGGTGCCTGCGAATACCTGTGAGGCCAGGGAGAGGGGACTGCAGGGACTGTGACCTGAGCAGCAGCCCCGTCTGGATTCTGATACGTCTTAGCAGCCTCTTTCTGTATCCGCTGTCTGCTGTCCACTGGAATGTGTCCTTTCCTAAACAAAGATACATCCTCCTCTGCTTCCCCCTTCCTCCTCCACTTCCCCATTCCTCCTCCACTTCCCCCTTCCTCCTCCACTTCCCCCTTCCTCCTCCACTTCCCCCTTCCTCCTCCACTTCCCCCTTCCTCCTCCACTTCCCCCTTCCTCCTCCACTTCCCCCTTCCTCCTCCACTTCCCCCTTCCTCCTCCATTCCCCCTTCCTCCTCCACTTCCCCCTTCCTTCTCCATTGAAGCCTCTCCTGCTGGGGATCAGCCAGGGCCTGTGCCTGCTAAGCAAGCCTTGTACCACCGACCTGCAATTCTACCGATTTGCTTTCTTAACTAGGTTTTTATTTGTTTTATTCAGAAGGGCCATACCATCCTTAATTCACCCATACTTTTTTTTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGGTCAGGCTGGCCTCAAACTCAGAAATCCCCCTGCCTCTGCCTCCTAAGTGCCGTCACCCATACTTTTAACGACTTTTCACTGTTTCTCTAACTTGTACAGTTCTCAGTGACGGACTACAGAAGTAACATTGCAGCCCAAGTTAAACGTGGGATTAAACGTGTATGCAACCAAACCTGGCTGGATTTTTTTTTTTTTTTTTGTGATTTACTTATTTTTATGTGCACTGGTGTTTGGCCTGCATGTATGTCTGTGTAAAGATGCCAGGTACTCTGGAACCGGAGTTAGGGACAGTTGTGAGCTGCCGTGTGGGTGCTAGGAATTGAACCTGGGTCCTTCAGGAGAGCAGCCAGTGCTCTTAACTACTAAGCCATCTCTCCAGCCTCAAAAAATTTTTTTAAAAAATTTATTCTTGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCGAAGGTCCGAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCACCCGTAATGAGATCCGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAAATAAATCTTTACAAAAAAAATTTATTCTTAATACAGAGTGTCATAAAACCCAGACTGGCTTCAAACTTAGGATGGCTTTGGACTCTTGGTGCTCCTGCCTTTGTGTCCTGAGGTTACAGATGTCTGCCACTGTGCCTTCCTGACCTTTACCTTGTTCTCAAAAGTCACTTTAGCTCTCCCAGGCTTATATCACATCTCCCAAACAATACAAATGTGAGTCACTGTTTTCCCCCCACCCCACCCCCGCCCCCAG
Seq C2 exon
TCCTGGAGTCAAGATGTGAGGCCCAGAAGTTATTCCTGAAGAAGGAGCTGTATGAGATAGAGACAGCGCAGTGGGAGATAATGAGGAAGCTCACGAGACAGGACCTTCAGTGCTCCAGTCTCAGCAGTGCCCGGGAATGGCATGGCCACCGTGAGAGACAGCGCGGATCTCAGGAGAGACAGTTCAGCGAACTGATCATCAACCGTGACGACGTGCCCACTCTCAGTCAGTGCCCATCCTTCAGGCTGCAGCAGATTATCAAGAATAAAGAGAAATATTGTGCAAGTAAAGAAAACAGGGAACACTATAAGCATGGCTCCCGGTTTGCTACCCATCAGATCGTTCGCACCACTGAGAAGCCGTATGAGTGTAAGGACTGTGGCAAGACCTTTAGACACCCCTCAGGGCTCACTCACCATCACAAAATTCACACCGGAAAGAAACCCTTTGAGTGTAAGGAATGTGGGAAAACATTCATTTGTGGCTCAGACCTGACACGGCATCACAGAATTCACACAGGTGAGAAGCCCTATGAGTGTAAGGACTGCGGAAAAGCCTTCAGTAGTGGCTCAAATTTTACTCGCCATCAGAGAATTCACACTGGCGAGAAGCCTTATGAATGTAAAGAATGTGGGAAGGCTTTTAGTAGCGGTTCAAATTTCACTCAACACCAGAGAATTCACACCGGAGAGAAACCCTACGAATGTAAGGAATGCGGCAATGCCTTTAGTCAGAGTTCCCAACTTATTAAACATCAAAGAATCCACACCGGTGAGAAGCCCTATGAGTGTAAGGAGTGTGAGAAGGCTTTCCGGTCGGGTTCTGACCTCACCAGACACCAGAGAATCCACACCGGAGAGAAGCCGTATGAATGTAAGATTTGTGGGAAAGCCTATTCTCAGAGTTCACAACTCATCAGTCATCACAGAATTCATGGTGGTAAGAAAGCCTACGAAGATGAGGACGGTGGGAAGAACTTTATCTATAACTCACAGCCTATTCAGCATCAGAACTTATATTGGTGATGAACCGACACATACATGATGTATGGGAAGACTCAGAACTGTCAGAGACTCTGTAGAGGCCCTCTAGACCGGAGAATGTCGAAACAGTTGACTTGTTGACAAACTTGTTCATCTAAGAGAAACTCATATTGGAGAAGCACCCTATGAATGCAGTATATTCTGGAAGCTGTCTAGTAACAGCTTGTATTTCTTTTGACTCAGATTATTCAGTCTGGCAAATAATTGAACAGAAAACAATGCTTTGATCTTAAACGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078768-Zfp566:NM_152814:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.155
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=7.6),PF0013017=C1_1=WD(100=14.0),PF134651=zf-H2C2_2=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=7.6),PF097235=Zn-ribbon_8=WD(100=12.0),PF134651=zf-H2C2_2=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=7.6),PF134651=zf-H2C2_2=WD(100=7.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: