BtaINT0165548 @ bosTau6
Intron Retention
Gene
ENSBTAG00000038951 | ZNF461
Description
zinc finger protein 461 [Source:HGNC Symbol;Acc:HGNC:21629]
Coordinates
chr18:47126878-47127853:+
Coord C1 exon
chr18:47126878-47127004
Coord A exon
chr18:47127005-47127790
Coord C2 exon
chr18:47127791-47127853
Length
786 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAAG
5' ss Score
4.2
3' ss Seq
ATTTCTTTTCTTATAACCAGGAC
3' ss Score
9.41
Exon sequences
Seq C1 exon
GGGTTGGTGATGTTCAAAGATGTGGCTATAGACGTCTCTCAGGAGGAATGGGAATGCCTGAACCCTGCGCAGAGGAATTTGTACAAAGATGTGATGTTGGAGAACTATAGCAACCTGGTTTCACTGG
Seq A exon
GTAAAGTTATCGGTCTCTAATAATTCAGAATCTGTTTCTTGGAGTTTCTGCTTTCTGTACTATGAATTTTAGGGCTGCCTTTCAAATAACAAGATGAATTTTCACTTTGTGTAGAAGTGAGCACAGTTGGATGGAGTTACACCTTCATTTTCTCTGTCCTCATACTTTTCTCTGGCATTTCTTATGATTGACTTTCTTCCTTAAAAATTAAGGAGCAGAATTAAAATTCGATACCATTATAGCATAACATGGTCAAAGAAACCAGGCTTTGTCTTTTGTTTCACTTGCAGTGTACCAAACATGCCAATGTTCTAGCGCAGATAAAGCTGAACACATGGGTCCTGGGTGCAAAGCTCATTAACCTTCTCAATTAGTGTAATGGACCGAATCAAAATATATCACTTACATTTACATTCAAAGGAACACTATTCCATTTACTGTAAAGTCTGTACTCTCTTTTAAACAATTTGCATTTGGAAATTACATTCTAAGAACTTTACATTTACCATGGAAAAATATCTGAGAATAAGTATTTCCGAAACTCCTTTTTTTTCTCAAAGGAAAATAAGAAGAGAAAGCTTATATAATTTAAATAACATTTTACCTTAAACATTATTTGTTTCTTATGATCCTGAGTTTATCTGTATATGAGAATTGGACTCTTCTTTCTTCTCTAGACCTTATTAAGTATCTTCTTGTTCTATAGGCTTTTTAAAATAAATTCTGAAACACAACATTTGAATACTTTAATTTCAACCTCATCTCCATTTCTTTTCTTATAACCAG
Seq C2 exon
GACTTTCTATTTCTAAGCCAGCTGTGATCACGTCACTGGAGCAAGGGAAGGAGCCCTGGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038951:ENSBTAT00000055644:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTTGGTGATGTTCAAAGATGTG
R:
CCATCCAGGGCTCCTTCCC
Band lengths:
190-976
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development