HsaALTD1042449-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000197859 | ADAMTSL2
Description
ADAMTS like 2 [Source:HGNC Symbol;Acc:HGNC:14631]
Coordinates
chr9:133554357-133555930:+
Coord C1 exon
chr9:133554357-133554632
Coord A exon
chr9:133554633-133554693
Coord C2 exon
chr9:133555558-133555930
Length
61 bp
Sequences
Splice sites
5' ss Seq
GAGGTAACC
5' ss Score
8.55
3' ss Seq
GCCACCTGTCTCCTCTCCAGACC
3' ss Score
9.27
Exon sequences
Seq C1 exon
GTGTGGAACCAGAACGGCAAAAGCCCCTCCATCACCTTCGAGTACACGCTGCTGCAGCCGCCACACGAGAGCCGCCCCCAGCCCATCTACTATGGCTTCTCCGAGAGCGCTGAGAGCCAGGGCCTGGACGGGGCCGGGCTGATGGGCTTCGTCCCGCACAACGGCTCCCTCTACGGCCAGGCCTCCTCAGAGCGGCTGGGCCTGGACAACCGGCTGTTCGGCCACCCGGGCCTGGACATGGAGCTGGGCCCCAGCCAGGGCCAGGAGACCAACGAG
Seq A exon
GTGTGCGAGCAGGCCGGCGGCGGGGCCTGCGAGGGGCCCCCCAGGGGCAAGGGCTTCCGAG
Seq C2 exon
ACCGCAACGTCACGGGGACTCCTCTCACCGGGGACAAGGATGACGAAGAGGTTGACACCCACTTCGCCTCCCAGGAGTTCTTCTCGGCTAACGCCATCTCTGACCAGCTGCTGGGCGCAGGCTCTGACTTGAAGGACTTCACCCTCAATGAGACTGTGAACAGCATCTTTGCACAGGGCGCCCCAAGGAGCTCCCTGGCCGAGAGCTTCTTCGTGGATTATGAGGAGAACGAGGGGGCTGGCCCTTACCTGCTCAACGGGTCCTACCTGGAGCTGAGCAGCGACAGGGTTGCCAACAGCTCCTCCGAGGCCCCATTCCCCAACGTTAGCACCAGCCTGCTCACCTCGGCCGGGAACAGGACTCACAAGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197859-23-20,24-20-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.575 A=NA C2=0.340
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=PD(14.4=15.0)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGACAACCGGCTGTTC
R:
GTGGGTGTCAACCTCTTCGTC
Band lengths:
138-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains