RnoALTD0001896-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000027742 | Adamtsl2
Description
ADAMTS-like 2 [Source:RGD Symbol;Acc:1305459]
Coordinates
chr3:5638742-5641040:+
Coord C1 exon
chr3:5638742-5639038
Coord A exon
chr3:5639039-5639099
Coord C2 exon
chr3:5640671-5641040
Length
61 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
AAACACCTGTCTCTCTGCAGACC
3' ss Score
10.54
Exon sequences
Seq C1 exon
GTGTGGAACCAGAACGGCAAAAGCCCCTCTATCACCTTTGAGTACACGCTGCTGCAGTCGCCACACATGCACCACCTGCCGCCGGTCTATTACAGCTTCTCGGAGGCAGCCTCTGAGAGCACCGAGAGCACCGAGCGCCAGGAGCTGGACAGTGCCAGGCTGCTGGGCTTCCTGCAGCACAATGGCTCACTCTACGGCCAGCCCTCCTCAGAGAGGCTGGGCCTGAACAGCCAGCTGTTTCCGCCTACAGCCCCTGAGGTGGAGCTGGGCCCAAGCAGAGGCCAGGAGACCAACGAG
Seq A exon
GTGTGCAAGCAAGCCAGCGGTGGGGTCTGTGAGGGACCTCCCAGGGGCAAGGGCTTCCAAG
Seq C2 exon
ACCACAATGCCACTGGGAGAGCTCTCTTGGGGGACAAGGATGACCGGGAGATCAGTGCCCATTTCACCTCCCATGAGCTTCTCTCAGCCAACACCATCTCCGATCAGCTCTTGGGCACAGGCTCTGACTCGGAAGAGTTCTCACTCAACGAGACCATGAACAGCATCTTTGCCCAGGGTGCCCCCAGAAGCTCTCCAGCTGAGAGCCTCTATGTGGATTATGAAGAGAATGAGGGGCCTGCTGCCTACTTGATCAATGGGTCTTACCTGGAACTGAACAGTGACAGGATCAATACCTCCTCCGAGGCCCCATTCCCCAACACCAGCGCCAGCCTCCCCAGCTTGGCTGGGAACAGGACTCACAAGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027742-15-14,16-14-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.575 A=NA C2=0.714
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=PD(14.4=14.2)
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCTGTTTCCGCCTACAG
R:
CTCATGGGAGGTGAAATGGGC
Band lengths:
144-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]