HsaALTD1042544-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000197961 | ZNF121
Description
zinc finger protein 121 [Source:HGNC Symbol;Acc:HGNC:12904]
Coordinates
chr19:9568095-9569082:-
Coord C1 exon
chr19:9569002-9569082
Coord A exon
NA
Coord C2 exon
chr19:9568095-9568175
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TTTTTTCTGTTTTACTTCAGAAT
3' ss Score
10.2
Exon sequences
Seq C1 exon
GACCTATTCAAACTCAGTCTGTCTCTTGACTGGAGGAGGAGAAGGAAAAGTTGAGCACATTGCCAACCGGAGTTCCCCAAG
Seq A exon
NA
Seq C2 exon
AATGGCAAGTTAAAACCAAAGTGTCAGCACCTCAACAACATTTTTTTTTGGCTTAACAAAACATCAAACGGCATACAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197961-5-5,6-5-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTATTCAAACTCAGTCTGTCTCT
R:
CATTTGTATGCCGTTTGATGTTTTGT
Band lengths:
162-284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains