HsaEX0073012 @ hg38
Exon Skipping
Gene
ENSG00000197961 | ZNF121
Description
zinc finger protein 121 [Source:HGNC Symbol;Acc:HGNC:12904]
Coordinates
chr19:9560353-9569082:-
Coord C1 exon
chr19:9568880-9569082
Coord A exon
chr19:9568095-9568175
Coord C2 exon
chr19:9560353-9567109
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTTTTTCTGTTTTACTTCAGAAT
3' ss Score
10.2
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GACCTATTCAAACTCAGTCTGTCTCTTGACTGGAGGAGGAGAAGGAAAAGTTGAGCACATTGCCAACCGGAGTTCCCCAAGGTGAGTATGAAGAACACTCCTGGTCAATGAGAAGTTCAGTATGTTTGGAAGCATAATGAAGATATATTTAAAAGATGTACTTTGTCACAGAACATGGGGCCATTGGACTTGGAAGTTTTAGG
Seq A exon
AATGGCAAGTTAAAACCAAAGTGTCAGCACCTCAACAACATTTTTTTTTGGCTTAACAAAACATCAAACGGCATACAAATG
Seq C2 exon
GCAGAAATCCACAATGGAGGGGAACTCTGTGACTTTATGGAAAATGGAGAAATCTTCAGTGAACACTCATGCCTTAATGCACACATGGGAACTGAAAATACAGGGGACACTTATGACTGTGATGAGTATGGAGAAAACTTTCCCATGTTACACAACAGTGCCCCTGCTGGAGAGACACTTTCTGTGTTGAATCAGTGCAGAAAAGCCTTCAGCCTGCCACCAAATGTTCACCAGAGAACGTGGATAGGAGACAAATCCTTTGAATACAGTGACTGTGAGGAAGCCTTTGTTGATCAGTCACATCTTCAGGCAAATAGGATAACTCACAATGGAGAAACACTCTATGAACAGAAGCAATGTGGGAGAGCTTTTACTTACTCCACAAGCCATGCTGTGTCTGTTAAAATGCATACTGTAGAAAAACCCTACGAATGTAAGGAATGTGGAAAATTCTTTAGATATTCTTCATATCTTAATAGTCACATGCGAACCCATACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197961_MULTIEX1-3/4=2-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.015
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=6.7),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.7),PF134651=zf-H2C2_2=WD(100=6.7),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.7),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.7)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGTTCCCCAAGGTGAGTA
R:
AAGTCACAGAGTTCCCCTCCA
Band lengths:
171-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development