HsaEX0073013 @ hg38
Exon Skipping
Gene
ENSG00000197961 | ZNF121
Description
zinc finger protein 121 [Source:HGNC Symbol;Acc:HGNC:12904]
Coordinates
chr19:9560353-9568175:-
Coord C1 exon
chr19:9568095-9568175
Coord A exon
chr19:9567648-9567705
Coord C2 exon
chr19:9560353-9567109
Length
58 bp
Sequences
Splice sites
3' ss Seq
CACTGTCTCCCATCACCTAGATG
3' ss Score
6.93
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
AATGGCAAGTTAAAACCAAAGTGTCAGCACCTCAACAACATTTTTTTTTGGCTTAACAAAACATCAAACGGCATACAAATG
Seq A exon
ATGGGACTGTCTAGTTGCAGGAAAACAAGCTCAGGCCTCCTGCTGATCCTATTTTATG
Seq C2 exon
GCAGAAATCCACAATGGAGGGGAACTCTGTGACTTTATGGAAAATGGAGAAATCTTCAGTGAACACTCATGCCTTAATGCACACATGGGAACTGAAAATACAGGGGACACTTATGACTGTGATGAGTATGGAGAAAACTTTCCCATGTTACACAACAGTGCCCCTGCTGGAGAGACACTTTCTGTGTTGAATCAGTGCAGAAAAGCCTTCAGCCTGCCACCAAATGTTCACCAGAGAACGTGGATAGGAGACAAATCCTTTGAATACAGTGACTGTGAGGAAGCCTTTGTTGATCAGTCACATCTTCAGGCAAATAGGATAACTCACAATGGAGAAACACTCTATGAACAGAAGCAATGTGGGAGAGCTTTTACTTACTCCACAAGCCATGCTGTGTCTGTTAAAATGCATACTGTAGAAAAACCCTACGAATGTAAGGAATGTGGAAAATTCTTTAGATATTCTTCATATCTTAATAGTCACATGCGAACCCATACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197961_MULTIEX1-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.015
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=6.9),PF134651=zf-H2C2_2=WD(100=6.7),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.7),PF134651=zf-H2C2_2=WD(100=6.7),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.7),PF134651=zf-H2C2_2=WD(100=6.4),PF134651=zf-H2C2_2=WD(100=6.7)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTCAGCACCTCAACAACA
R:
TGTGTGCATTAAGGCATGAGTGT
Band lengths:
147-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development