HsaALTD1042590-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000198003 | CCDC151
Description
coiled-coil domain containing 151 [Source:HGNC Symbol;Acc:HGNC:28303]
Coordinates
chr19:11421128-11421832:-
Coord C1 exon
chr19:11421677-11421832
Coord A exon
chr19:11421637-11421676
Coord C2 exon
chr19:11421128-11421212
Length
40 bp
Sequences
Splice sites
5' ss Seq
GGAGTAGGG
5' ss Score
-1.95
3' ss Seq
CGCTTCCCATCCCCGCTTAGTTC
3' ss Score
6.74
Exon sequences
Seq C1 exon
GAGGACGGCCGCTTCGCGGGAAAGGAGCTGGATCCCCAGGCAGATAACTATGTGCCAAACCTGCTGGGCCTCGTGGAGGAAAAGCTGCTGAAACTGCAGGCGCAGCTCCAGGGCCACGACGTGCAGGAGATGCTGTGCCACATCGCTAACCGCGAG
Seq A exon
GTGCCCTGCAGCCATGGGGCAGAGCTCCAGAGATCTAGGA
Seq C2 exon
TTCCTCGCCAGCTTAGAGGGAAGGCTGCCCGAATACAACACCCGCATCGCCCTGCCCCTTGCCACTTCCAAGGACAAGTTTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198003-18-26,19-26-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.058 A=NA C2=0.103
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGGAGGAAAAGCTGCTGAA
R:
GATGCGGGTGTTGTATTCGGG
Band lengths:
133-173
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains