HsaINT0029236 @ hg38
Intron Retention
Gene
ENSG00000198003 | CCDC151
Description
coiled-coil domain containing 151 [Source:HGNC Symbol;Acc:HGNC:28303]
Coordinates
chr19:11421128-11421832:-
Coord C1 exon
chr19:11421677-11421832
Coord A exon
chr19:11421213-11421676
Coord C2 exon
chr19:11421128-11421212
Length
464 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCCC
5' ss Score
4.12
3' ss Seq
CGCTTCCCATCCCCGCTTAGTTC
3' ss Score
6.74
Exon sequences
Seq C1 exon
GAGGACGGCCGCTTCGCGGGAAAGGAGCTGGATCCCCAGGCAGATAACTATGTGCCAAACCTGCTGGGCCTCGTGGAGGAAAAGCTGCTGAAACTGCAGGCGCAGCTCCAGGGCCACGACGTGCAGGAGATGCTGTGCCACATCGCTAACCGCGAG
Seq A exon
GTGCCCTGCAGCCATGGGGCAGAGCTCCAGAGATCTAGGAGTAGGGCTGGGTCGGAAAACCAGGGAACCGGGGGCAACTTCGGGAGACCAGATTGCAGGCTGATCAGCCAGGAAGGGGTCTCGGGGACAACGGGCGAGGTTTGACGAGCCAGGGGTGAGCCCGAGCCACGAGGGAAGAAACCAGAAGAGGTGCAGGCGGGTCCTGTGAGGCTAGAGGACGCGGCTGGGGTATCCGGATGGGGAGAGGCCTAGTGGCAGGGCCCCAGAGACCAGGGGCGGACCTGAGTGATGAGGGGGTGAAGCTGGGTATCAAGGTGCCTGCTTAAGGAGGGATGGGAGTGGGCAGTGGTCTCCAGTTGGAACTAGGGCATATCTCGGAATGGGGTAGGGAGGAGGGGGAACGTGACTTCTCGGTGGCCCCTGGCCCCGCCCACCTTCCTCTCTCGCTTCCCATCCCCGCTTAG
Seq C2 exon
TTCCTCGCCAGCTTAGAGGGAAGGCTGCCCGAATACAACACCCGCATCGCCCTGCCCCTTGCCACTTCCAAGGACAAGTTTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198003:ENST00000356392:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.058 A=NA C2=0.103
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGCGGGAAAGGAGCTG
R:
TTGTCCTTGGAAGTGGCAAGG
Band lengths:
222-686
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development