RnoINT0030550 @ rn6
Intron Retention
Gene
ENSRNOG00000013263 | Ccdc151
Description
coiled-coil domain containing 151 [Source:RGD Symbol;Acc:1310048]
Coordinates
chr8:23001435-23002042:-
Coord C1 exon
chr8:23001887-23002042
Coord A exon
chr8:23001520-23001886
Coord C2 exon
chr8:23001435-23001519
Length
367 bp
Sequences
Splice sites
5' ss Seq
GAGGTTCAC
5' ss Score
-1.16
3' ss Seq
CTCTCCTGCCTCCCCCACAGTTC
3' ss Score
10.54
Exon sequences
Seq C1 exon
GATGATACCATATTGGCAGGAAAGAAGTTAGACCGGGAATCAGAGGACTACCCGAGCAATCTGCTGGTAGTTGTCCAGGAAAAGCTGCTAAAACTGCAGGAGCACCTGGACAACCAGGACGTGCCCGAGATGCTTCGACACATAGCAGACCGAGAG
Seq A exon
GTTCACACAGATCACTCCCGGGCCTGTGGGGATCAAGACTGGGGGTGCCGGGTGGGAGTCGAAAACCAGAGAGCAGACTGAGATAGGAAAAACAGGTGCTGGCTGAGGTGTGACCTTCATAACCAAAACAGAGAATCAGGGACTGGGTGGATCGAAGGTTGGGAGGGCTGGAGAACCAGGGATGGCCTATGGGCAGGTCCTTAGAAACAAGGCTTGAGTGACAGGGTAGTTCTGCTGGGGAAAAGGATGCAGGGAAGAGTGGGAAGTGATCTCCACTTAGAATCCAGTAGAGTCGTAACGTAAGGTGTGAGGAGGTGGGATACAGCTTCACTGCAGTCCCCACACCTCTCTCCTGCCTCCCCCACAG
Seq C2 exon
TTCCTGGCCACGTTAGAAGGAAAGCTGCCTCTGTACAACACCCGCATCCTTCTGCCCGTGGCTAGTGTCAAGGACAAGTTCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013263:ENSRNOT00000017820:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.058 A=NA C2=0.034
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGATACCATATTGGCAGGAAAGA
R:
AGAACTTGTCCTTGACACTAGCC
Band lengths:
238-605
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]