MmuINT0030497 @ mm9
Intron Retention
Gene
ENSMUSG00000039632 | Ccdc151
Description
coiled-coil domain containing 151 [Source:MGI Symbol;Acc:MGI:1924859]
Coordinates
chr9:21794841-21795401:-
Coord C1 exon
chr9:21795246-21795401
Coord A exon
chr9:21794926-21795245
Coord C2 exon
chr9:21794841-21794925
Length
320 bp
Sequences
Splice sites
5' ss Seq
GAGGTTCAC
5' ss Score
-1.16
3' ss Seq
CCTACCCCCCCCCCCCGCAGTTC
3' ss Score
10.35
Exon sequences
Seq C1 exon
GATGATACGGTATTGGCAGGAAAGAAGTTAGACCGGGACTCAGAGGACTACGCTTACAATCTGCTGGTAGTTGTCCAGGAAAAGCTGCTGAAACTGCAGGACCAACTGGAGAGCCAGGACGTGCCTGAGTTGCTGCGACACATAGCAGACCGAGAG
Seq A exon
GTTCACACACATCCTCCGCGGCCAGTGGGGACCAAGGCAGGGGGTGGGGGTGGGGGTGGGGGAGGGAGGGTCGAAAATCAGAGAGCAGACTGACATAGGAAACAGGTGCTGAATGGGCGTGAGCTTCATAACCAGAGTAGCGAAGCCTGGACTGGGTGGATCTCAGGTGGCAGGGCCTCCGAAACCAGGCAGCGAAGGGTGGGCAGTGATCTCCACCTAGAATCCGGTAGAAACTCAATGTAAGGTGCACGGAGGTGGAACAGAGCCTCACTGCCATCCCACATCTCTCTCCGGCCTCCCCCTACCCCCCCCCCCCGCAG
Seq C2 exon
TTCCTGGCCACGCTAGAAGGAAAGCTGCCCCTATACAACACCCGCATCCTTCTGCCCGTCGCCAGTGTCAAGGACAAGTTCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039632-Ccdc151:NM_029939:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGATACGGTATTGGCAGGA
R:
AGAACTTGTCCTTGACACTGGC
Band lengths:
238-558
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: