HsaALTD1043107-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000198793 | MTOR
Description
mechanistic target of rapamycin [Source:HGNC Symbol;Acc:HGNC:3942]
Coordinates
chr1:11117004-11121368:-
Coord C1 exon
chr1:11121246-11121368
Coord A exon
chr1:11121095-11121245
Coord C2 exon
chr1:11117004-11117086
Length
151 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
CATGCACTCCTGTGTTCTAGGTG
3' ss Score
10.97
Exon sequences
Seq C1 exon
ATGGCTCCGGACTATGACCACTTGACTCTGATGCAGAAGGTGGAGGTGTTTGAGCATGCCGTCAATAATACAGCTGGGGACGACCTGGCCAAGCTGCTGTGGCTGAAAAGCCCCAGCTCCGAG
Seq A exon
GTAGGCCACTGGGCCCTGCAGACCTGCGCTCTCCTGGAACCCCCACTCGCAATAGGATGGCCCTCCCATCTGTTCATGTGCACACAGCGGCTCTTCTTTGCTGTGATTGGCTGTAGAGCGTGTCCAGACTTTTCTAACAAAAATGAAATGG
Seq C2 exon
GTGTGGTTTGACCGAAGAACCAATTATACCCGTTCTTTAGCGGTCATGTCAATGGTTGGGTATATTTTAGGCCTGGGAGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198793-94-91,95-91-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0045422=PI3_PI4_kinase=FE(15.9=100)
A:
NA
C2:
PF0045422=PI3_PI4_kinase=FE(10.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGCTCCGGACTATGACCAC
R:
TCTCCCAGGCCTAAAATATACCCA
Band lengths:
203-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains